Add files via upload

Examples.done/111.chr21.samples.filter.phased.log

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+PLINK v1.90b6.24 64-bit (6 Jun 2021)
+Options in effect:
+  --cm-map 103.genetic_map_chr21_combined_b38.txt 21
+  --double-id
+  --make-bed
+  --out 111.chr21.samples.filter.phased
+  --vcf Test.dataset.chr21.vcf.gz
+
+Hostname: clc073
+Working directory: /home/zhangxiaoxi/Construct-ancestral-genome/Examples.done
+Start time: Thu Nov  7 19:31:40 2024
+
+Random number seed: 1730979100
+385389 MB RAM detected; reserving 192694 MB for main workspace.
+--vcf: 111.chr21.samples.filter.phased-temporary.bed +
+111.chr21.samples.filter.phased-temporary.bim +
+111.chr21.samples.filter.phased-temporary.fam written.
+107519 variants loaded from .bim file.
+25 people (0 males, 0 females, 25 ambiguous) loaded from .fam.
+Ambiguous sex IDs written to 111.chr21.samples.filter.phased.nosex .
+--cm-map: 1 chromosome updated.
+Using 1 thread (no multithreaded calculations invoked).
+Before main variant filters, 25 founders and 0 nonfounders present.
+Calculating allele frequencies... done.
+Total genotyping rate is exactly 1.
+107519 variants and 25 people pass filters and QC.
+Note: No phenotypes present.
+--make-bed to 111.chr21.samples.filter.phased.bed +
+111.chr21.samples.filter.phased.bim + 111.chr21.samples.filter.phased.fam ...
+done.
+
+End time: Thu Nov  7 19:31:40 2024

Examples.done/131.chr21.samples.filter.phased.log

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+PLINK v2.00a3.6LM AVX2 Intel (14 Aug 2022)
+Options in effect:
+  --chr 21
+  --double-id
+  --export haps ref-first
+  --out 131.chr21.samples.filter.phased
+  --vcf Test.dataset.chr21.vcf.gz
+
+Hostname: clc073
+Working directory: /home/zhangxiaoxi/Construct-ancestral-genome/Examples.done
+Start time: Thu Nov  7 19:34:24 2024
+
+Random number seed: 1730979264
+385389 MiB RAM detected; reserving 192694 MiB for main workspace.
+Using up to 192 threads (change this with --threads).
+--vcf: 107519 variants scanned.
+--vcf: 131.chr21.samples.filter.phased-temporary.pgen +
+131.chr21.samples.filter.phased-temporary.pvar.zst +
+131.chr21.samples.filter.phased-temporary.psam written.
+25 samples (0 females, 0 males, 25 ambiguous; 25 founders) loaded from
+131.chr21.samples.filter.phased-temporary.psam.
+107519 variants loaded from 131.chr21.samples.filter.phased-temporary.pvar.zst.
+Note: No phenotype data present.
+Writing 131.chr21.samples.filter.phased.haps ... done.
+Writing 131.chr21.samples.filter.phased.sample ... done.
+
+End time: Thu Nov  7 19:34:24 2024