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ellispatrick committed Nov 19, 2024
1 parent 33c02e8 commit b45436e
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1 change: 1 addition & 0 deletions .nojekyll
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c56e5631
1,015 changes: 1,015 additions & 0 deletions 01-processing.html

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1,065 changes: 1,065 additions & 0 deletions 02-quality_control.html

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1,168 changes: 1,168 additions & 0 deletions 03-cell_annotation.html

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1,535 changes: 1,535 additions & 0 deletions 04-cell_localisation.html

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902 changes: 902 additions & 0 deletions 05-cellular_niches.html

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1,299 changes: 1,299 additions & 0 deletions 06-changes_in_marker_expression.html

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719 changes: 719 additions & 0 deletions 07-classification.html

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1,994 changes: 1,994 additions & 0 deletions 08-case_study1.html

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658 changes: 658 additions & 0 deletions 09-references.html

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Binary file added IMC_colon.png
168 changes: 168 additions & 0 deletions css/hexagons.css
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* {
margin: 0;
padding: 0;
}
/*body {
color: black;
}*/
#hexGrid {
display: flex;
flex-wrap: wrap;
width: 90%;
margin: 0 auto;
overflow: hidden;
font-family: 'Raleway', sans-serif;
font-size: 15px;
list-style-type: none;
}

.hex {
position: relative;
visibility:hidden;
outline:1px solid transparent; /* fix for jagged edges in FF on hover transition */
}
.hex::after{
content:'';
display:block;
padding-bottom: 86.602%; /* = 100 / tan(60) * 1.5 */
}
.hexIn{
position: absolute;
width:96%;
padding-bottom: 110.851%; /* = width / sin(60) */
margin:0 2%;
overflow: hidden;
visibility: hidden;
outline:1px solid transparent; /* fix for jagged edges in FF on hover transition */
-webkit-transform: rotate3d(0,0,1,-60deg) skewY(30deg);
-ms-transform: rotate3d(0,0,1,-60deg) skewY(30deg);
transform: rotate3d(0,0,1,-60deg) skewY(30deg);
}
.hexIn * {
position: absolute;
visibility: visible;
outline:1px solid transparent; /* fix for jagged edges in FF on hover transition */
}
.hexLink {
display:block;
width: 100%;
height: 100%;
text-align: center;
color: #fff;
overflow: hidden;
-webkit-transform: skewY(-30deg) rotate3d(0,0,1,60deg);
-ms-transform: skewY(-30deg) rotate3d(0,0,1,60deg);
transform: skewY(-30deg) rotate3d(0,0,1,60deg);
}

/*** HEX CONTENT **********************************************************************/
.hex img {
left: -100%;
right: -100%;
width: auto;
height: 100%;
margin: 0 auto;
-webkit-transform: rotate3d(0,0,0,0deg);
-ms-transform: rotate3d(0,0,0,0deg);
transform: rotate3d(0,0,0,0deg);
}

.hex h1, .hex p {
width: 100%;
padding: 5%;
box-sizing:border-box;
background-color: white;
color: black;
font-weight: 300;
-webkit-transition: -webkit-transform .2s ease-out, opacity .3s ease-out;
transition: transform .2s ease-out, opacity .3s ease-out;
}
.hex h1 {
bottom: 50%;
padding-top:50%;
font-size: 1.5em;
z-index: 1;
-webkit-transform:translate3d(0,-100%,0);
-ms-transform:translate3d(0,-100%,0);
transform:translate3d(0,-100%,0);
}
.hex h1::after {
content: '';
position: absolute;
bottom: 0;
left: 45%;
width: 10%;
text-align: center;
border-bottom: 1px solid #fff;
}
.hex p {
top: 50%;
padding-bottom:50%;
-webkit-transform:translate3d(0,100%,0);
-ms-transform:translate3d(0,100%,0);
transform:translate3d(0,100%,0);
}


/*** HOVER EFFECT **********************************************************************/
.hexLink:hover h1, .hexLink:focus h1,
.hexLink:hover p, .hexLink:focus p{
-webkit-transform:translate3d(0,0,0);
-ms-transform:translate3d(0,0,0);
transform:translate3d(0,0,0);
}

/*** HEXAGON SIZING AND EVEN ROW INDENTATION *****************************************************************/
@media (min-width:1201px) { /* <- 5-4 hexagons per row */
#hexGrid{
padding-bottom: 4.4%
}
.hex {
width: 20%; /* = 100 / 5 */
}
.hex:nth-child(9n+6){ /* first hexagon of even rows */
margin-left:10%; /* = width of .hex / 2 to indent even rows */
}
}

@media (max-width: 1200px) and (min-width:901px) { /* <- 4-3 hexagons per row */
#hexGrid{
padding-bottom: 5.5%
}
.hex {
width: 25%; /* = 100 / 4 */
}
.hex:nth-child(7n+5){ /* first hexagon of even rows */
margin-left:12.5%; /* = width of .hex / 2 to indent even rows */
}
}

@media (max-width: 900px) and (min-width:601px) { /* <- 3-2 hexagons per row */
#hexGrid{
padding-bottom: 7.4%
}
.hex {
width: 33.333%; /* = 100 / 3 */
}
.hex:nth-child(5n+4){ /* first hexagon of even rows */
margin-left:16.666%; /* = width of .hex / 2 to indent even rows */
}
}

@media (max-width: 600px) { /* <- 2-1 hexagons per row */
#hexGrid{
padding-bottom: 11.2%
}
.hex {
width: 50%; /* = 100 / 3 */
}
.hex:nth-child(3n+3){ /* first hexagon of even rows */
margin-left:25%; /* = width of .hex / 2 to indent even rows */
}
}

@media (max-width: 400px) {
#hexGrid {
font-size: 13px;
}
}
31 changes: 31 additions & 0 deletions images/USydLogo.svg

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