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GuillaumeLeGoc committed Jan 29, 2025
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Expand Up @@ -4,15 +4,16 @@ tags:
- Python
- histology
- immunochemistry
- image
- processing
- microscopy
- image analysis
- neuroscience
authors:
- name:
given-names: Guillaume
surname: Le Goc
orcid: 0000-0002-6946-1142
affiliation: 1
corresponding: true
- name: Alexis d'Humières
orcid: 0009-0006-3860-2084
affiliation: 1
Expand All @@ -22,6 +23,7 @@ authors:
- name: Julien Bouvier
orcid: 0000-0002-1307-4426
affiliation: 1
corresponding: true
affiliations:
- name: Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91400, Saclay, France
index: 1
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It is worth mentioning that BraiAn [@chiaruttini2024], a toolbox following a similar purpose, was released during the development of the present work, but also provides a Java API for the QuPath side, while `cuisto` provides simpler, standalone QuPath scripts.

# Acknowledgements
We would like to thank the original author of QuPath, Peter Bankhead and all contributors. We also thank the original author of ABBA, Nicolas Chiaruttini, especially for his support on ABBA-Python. We thank all contributors of the Brainglobe initiative. We're grateful to member of the lab Patricia del Cerro de Pablo for her early feedbacks. This work was supported by the European Research Council (ERC CoG 101089318) and the Fondation pour la Recherche Médicale (FRM EQU202203014620).
We would like to thank the original author of QuPath, Peter Bankhead and all contributors. We also thank the original author of ABBA, Nicolas Chiaruttini, especially for his support on ABBA-Python. We thank all contributors of the Brainglobe initiative. We're grateful to member of the lab Patricia del Cerro de Pablo for her early feedbacks. This work has received funding from the European Research Council (ERC) under the European Union's Horizon Europe research and innovation program (grant agreement No 101089318), the Fondation pour la Recherche Médicale (FRM EQU202203014620 and ECO202206015594), the CNRS and the University Paris-Saclay.

# References

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