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dinithins authored Jul 1, 2024
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# GeneDistFinder
Alignment free approach to find genes with different alignment patterns across cell development time.
Embedding alignment approach to find genes with different alignment patterns across cell development time.

**NNDistFinder** module computes distributional distances of gene expression for each query cell
in terms of its own neighbourhood cells vs. reference neighbourhood cells. Cell neighbourhoods are queried using the data structures available in BBKNN package (https://github.com/Teichlab/bbknn).
Expand All @@ -8,3 +8,5 @@ Please see Notebook.ipynb for an example analysis using the pan fetal reference

Implemented by: Dinithi Sumanaweera <br>
Acknowledgement: Krzysztof Polanski

Supplementary for research poster "Gene-level alignment of single-cell trajectories" at ISMB 2024 conference.

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