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dinithins authored Jul 1, 2024
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"source": [
"# Neighbourhood based query to reference distance finder at gene-level\n",
"\n",
"### An alignment free approach (i.e. no time series alignment) to find genes with different alignment patterns across time.\n",
"### An embedding alignment approach (i.e. no time series alignment) to find genes with different alignment patterns across time.\n",
"\n",
"This analysis involves 3 main steps:\n",
"\n",
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"Cell neighbourhoods are queried using the data structures available in BBKNN package (https://github.com/Teichlab/bbknn). <br>\n",
"**Acknowledgement**: Krzysztof Polanski\n",
"\n",
"This is a supplementary notebook for research poster: \"Gene-level alignment of single-cell trajectories\"\n"
"This is a supplementary notebook for research poster: \"Gene-level alignment of single-cell trajectories\" at ISMB 2024 conference. "
]
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{
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