fix test

Teichlab · Mar 10, 2024 · 0c4fb79 · 0c4fb79
1 parent 7fd9276
commit 0c4fb79
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/snp2cell/snp2cell_class.py b/snp2cell/snp2cell_class.py
@@ -709,7 +709,7 @@ def adata_add_de_scores(
             if "method" in kwargs and kwargs["method"] == "logreg":
                 query_str = f"group == '{grp}'"
             else:
-                query_str = f"group == '{grp}' and pvals_adj < 0.05 and logfoldchanges > 0"
+                query_str = f"group == '{grp}' and pvals_adj < 0.05 and scores > 0"
             scr = de_df.query(query_str).set_index("names")["scores"][:topn].to_dict()
 
             scr_key = f"DE_{grp}__score"

diff --git a/snp2cell/util.py b/snp2cell/util.py
@@ -457,7 +457,7 @@ def get_snp_score(df):
             snp_bf = (
                 np.log(1 - snp_r) / 2 + (snp_beta / snp_se) ** 2 * snp_r / 2
             )  # log BF
-            return np.exp(snp_bf - snp_ld/4)
+            return np.exp(snp_bf - snp_ld / 4)
         except Exception as e:
             raise ValueError(f"could not compute score using {df} \n{e}")