build base 0.7

.github/workflows/bert-models-cicd.yaml

@@ -50,40 +50,41 @@ jobs:
 # Note: when trying to run build_push-bert-base with other jobs below, an error is reported on line 90. 
 #       However, when run on its own it works fine.
 
-  # build_push-bert-base:
-  #   name: "build/push bluebert-base container image"
-  #   runs-on: ubuntu-latest
-  #   # Add "id-token" with the intended permissions.
-  #   permissions:
-  #     contents: "read"
-  #     id-token: "write"
-  #   env:
-  #     IMAGE_NAME: bluebert-base
-  #     DOCKERFILE: base.Dockerfile
-  #   steps:
-  #   - name: Checkout repository
-  #     uses: actions/checkout@v2
-  #   - name: Authenticate to Google Cloud
-  #     uses: google-github-actions/auth@v0
-  #     with:
-  #       workload_identity_provider: ${{ secrets.WORKLOAD_IDENTITY_PROVIDER_LOCATION }}
-  #       service_account: "${{ secrets.SERVICE_ACCOUNT }}@${{ secrets.GCE_PROJECT }}.iam.gserviceaccount.com"
-  #   - name: 'Set up Cloud SDK'
-  #     uses: 'google-github-actions/setup-gcloud@v1'
-  #     with:
-  #       version: '>= 363.0.0'
-  #   - name: Configure Docker Authentication
-  #     # if: contains(steps.changed-files.outputs.all_modified_files, env.DOCKERFILE)
-  #     run: gcloud --quiet auth configure-docker
-  #   - name: Set MODEL_VERSION env
-  #     # if: contains(steps.changed-files.outputs.all_modified_files, env.DOCKERFILE)
-  #     run: echo "MODEL_VERSION=$(grep 'BASE' MODEL_VERSIONS | cut -f 2 -d '=')" >> $GITHUB_ENV
-  #   - name: Build Docker Image
-  #     # if: contains(steps.changed-files.outputs.all_modified_files, env.DOCKERFILE)
-  #     run: docker build --tag "gcr.io/$PROJECT_ID/$IMAGE_NAME:$MODEL_VERSION" -f ${{ env.DOCKERFILE }} .
-  #   - name: Publish Docker Image to Google Container Registry
-  #     # if: contains(steps.changed-files.outputs.all_modified_files, env.DOCKERFILE)
-  #     run: docker push "gcr.io/$PROJECT_ID/$IMAGE_NAME:$MODEL_VERSION"
+    build_push-bert-base:
+      name: "build/push bluebert-base container image"
+      runs-on: ubuntu-latest
+      env:
+        IMAGE_NAME: bluebert-base
+        DOCKERFILE: base.Dockerfile
+      permissions:
+        contents: 'read'
+        id-token: 'write'
+      steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - id: 'auth'
+        uses: 'google-github-actions/auth@v2'
+        with:
+          project_id: ${{ secrets.GCE_PROJECT }}
+          service_account: ${{ secrets.SERVICE_ACCOUNT }}
+          credentials_json: ${{ secrets.SERVICE_ACCOUNT_KEY }}
+      - name: 'Set up Cloud SDK'
+        uses: 'google-github-actions/setup-gcloud@v2'
+        with:
+          version: '>= 363.0.0'
+      - name: Setup Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.7
+      - name: Configure Docker Authentication
+        run: gcloud --quiet auth configure-docker
+      - name: Set MODEL_VERSION env
+        run: echo "MODEL_VERSION=$(grep 'BASE' MODEL_VERSIONS | cut -f 2 -d '=')" >> $GITHUB_ENV
+      - name: Build Docker Image
+        run: docker build --tag "gcr.io/$PROJECT_ID/$IMAGE_NAME:$MODEL_VERSION" -f ${{ env.DOCKERFILE }} .
+      - name: Publish Docker Image to Google Container Registry
+        run: docker push "gcr.io/$PROJECT_ID/$IMAGE_NAME:$MODEL_VERSION"
 
 # # ----------------------------------------------------------------------------------- #
 #   # ----------------------------------------------------------------------------------- #

MODEL_VERSIONS

@@ -1,4 +1,4 @@
-BASE=0.6.1
+BASE=0.7
 BL_CHEMICAL_TO_DISEASE_OR_PHENOTYPIC_FEATURE=0.1
 BL_CHEMICAL_TO_GENE=0.1
 BL_DISEASE_TO_PHENOTYPIC_FEATURE=0.1