This repository is develop to estimate the telomere length from the TEDDY whole-genome sequencing (WGS) data using five different tools: Computel, Telseq, Telomerecat, qMotif and Motif_counter.
This repository uses:
- Please follow https://github.com/USF-HII/pub-teddy-human-wgs-telomere/blob/master/Snakefile
- Docker https://www.docker.com/ to build a container with all the necessary software
- Singularity https://sylabs.io/docs/ to execute the container in a High Performance Computing environment
- Snakemake https://snakemake.readthedocs.io/en/stable/ to coordinate the execution of the pipeline