Skip to content

Commit

Permalink
deploy: 4ae3679
Browse files Browse the repository at this point in the history
  • Loading branch information
amrit110 committed Jun 10, 2024
1 parent facd58f commit cd3cd8a
Show file tree
Hide file tree
Showing 9 changed files with 207 additions and 201 deletions.
2 changes: 1 addition & 1 deletion searchindex.js

Large diffs are not rendered by default.

18 changes: 9 additions & 9 deletions tutorials/eicu.html
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:53,078 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-06-10 19:01:15,699 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -679,15 +679,15 @@ <h2>Example 1. Get all female patients discharged in 2014 (limit to 100 rows).<a
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:53,990 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:16,864 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:53,992 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.173615 s
2024-06-10 19:01:16,866 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.350999 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -722,15 +722,15 @@ <h2>Example 2. Get all patient encounters with diagnoses (<code class="docutils
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:55,360 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:18,209 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:55,362 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.340065 s
2024-06-10 19:01:18,210 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.314059 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -771,15 +771,15 @@ <h2>Example 3. Get potassium lab tests for patients discharged in the year 2014,
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:55,739 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:18,886 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:55,741 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.334397 s
2024-06-10 19:01:18,894 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.637988 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -818,15 +818,15 @@ <h2>Example 4. Get glucose medications (substring search) for female patients di
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:56,352 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:20,850 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:05:56,354 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.575778 s
2024-06-10 19:01:20,852 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 1.911808 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
58 changes: 29 additions & 29 deletions tutorials/eicu.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
"iopub.execute_input": "2024-06-04T04:05:50.830961Z",
"iopub.status.busy": "2024-06-04T04:05:50.829486Z",
"iopub.status.idle": "2024-06-04T04:05:53.797705Z",
"shell.execute_reply": "2024-06-04T04:05:53.795993Z"
"iopub.execute_input": "2024-06-10T23:01:11.967751Z",
"iopub.status.busy": "2024-06-10T23:01:11.966697Z",
"iopub.status.idle": "2024-06-10T23:01:16.494110Z",
"shell.execute_reply": "2024-06-10T23:01:16.492343Z"
},
"tags": []
},
Expand All @@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:53,078 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
"2024-06-10 19:01:15,699 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
Expand Down Expand Up @@ -124,10 +124,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
"iopub.execute_input": "2024-06-04T04:05:53.805756Z",
"iopub.status.busy": "2024-06-04T04:05:53.804066Z",
"iopub.status.idle": "2024-06-04T04:05:53.999037Z",
"shell.execute_reply": "2024-06-04T04:05:53.997356Z"
"iopub.execute_input": "2024-06-10T23:01:16.501427Z",
"iopub.status.busy": "2024-06-10T23:01:16.500605Z",
"iopub.status.idle": "2024-06-10T23:01:16.873901Z",
"shell.execute_reply": "2024-06-10T23:01:16.872044Z"
},
"tags": []
},
Expand All @@ -136,14 +136,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:53,990 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-06-10 19:01:16,864 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:53,992 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.173615 s\n"
"2024-06-10 19:01:16,866 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.350999 s\n"
]
},
{
Expand Down Expand Up @@ -180,10 +180,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
"iopub.execute_input": "2024-06-04T04:05:54.006258Z",
"iopub.status.busy": "2024-06-04T04:05:54.005423Z",
"iopub.status.idle": "2024-06-04T04:05:55.369017Z",
"shell.execute_reply": "2024-06-04T04:05:55.367361Z"
"iopub.execute_input": "2024-06-10T23:01:16.881089Z",
"iopub.status.busy": "2024-06-10T23:01:16.880063Z",
"iopub.status.idle": "2024-06-10T23:01:18.217677Z",
"shell.execute_reply": "2024-06-10T23:01:18.215969Z"
},
"tags": []
},
Expand All @@ -192,14 +192,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:55,360 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-06-10 19:01:18,209 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:55,362 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.340065 s\n"
"2024-06-10 19:01:18,210 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.314059 s\n"
]
},
{
Expand Down Expand Up @@ -236,10 +236,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
"iopub.execute_input": "2024-06-04T04:05:55.376153Z",
"iopub.status.busy": "2024-06-04T04:05:55.375317Z",
"iopub.status.idle": "2024-06-04T04:05:55.747995Z",
"shell.execute_reply": "2024-06-04T04:05:55.746341Z"
"iopub.execute_input": "2024-06-10T23:01:18.225200Z",
"iopub.status.busy": "2024-06-10T23:01:18.223592Z",
"iopub.status.idle": "2024-06-10T23:01:18.901767Z",
"shell.execute_reply": "2024-06-10T23:01:18.899722Z"
},
"tags": []
},
Expand All @@ -248,14 +248,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:55,739 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-06-10 19:01:18,886 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:55,741 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.334397 s\n"
"2024-06-10 19:01:18,894 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.637988 s\n"
]
},
{
Expand Down Expand Up @@ -298,10 +298,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
"iopub.execute_input": "2024-06-04T04:05:55.754957Z",
"iopub.status.busy": "2024-06-04T04:05:55.754138Z",
"iopub.status.idle": "2024-06-04T04:05:56.361507Z",
"shell.execute_reply": "2024-06-04T04:05:56.359881Z"
"iopub.execute_input": "2024-06-10T23:01:18.912575Z",
"iopub.status.busy": "2024-06-10T23:01:18.911469Z",
"iopub.status.idle": "2024-06-10T23:01:20.859397Z",
"shell.execute_reply": "2024-06-10T23:01:20.857745Z"
},
"tags": []
},
Expand All @@ -310,14 +310,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:56,352 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
"2024-06-10 19:01:20,850 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-06-04 00:05:56,354 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.575778 s\n"
"2024-06-10 19:01:20,852 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.911808 s\n"
]
},
{
Expand Down
18 changes: 9 additions & 9 deletions tutorials/mimiciii.html
Original file line number Diff line number Diff line change
Expand Up @@ -615,7 +615,7 @@ <h2>Imports and instantiate <code class="docutils literal notranslate"><span cla
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:09,533 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
2024-06-10 19:01:37,857 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Database setup, ready to run queries!
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -649,15 +649,15 @@ <h2>Example 1. Get all male patients with a mortality outcome.<a class="headerli
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:15,785 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:44,266 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:15,786 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.237942 s
2024-06-10 19:01:44,268 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.304998 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -697,15 +697,15 @@ <h2>Example 2. Get all female patient encounters with diagnoses (<code class="do
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:19,613 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:48,695 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:19,615 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 3.775134 s
2024-06-10 19:01:48,700 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 4.374799 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -737,15 +737,15 @@ <h2>Example 3. Get potassium lab tests for female patients.<a class="headerlink"
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:19,862 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:01:49,220 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:06:19,864 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.201528 s
2024-06-10 19:01:49,222 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 0.468204 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down Expand Up @@ -782,15 +782,15 @@ <h2>Example 4. Get AaDO2 carevue chart events for male patients that have a <cod
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:14:50,567 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
2024-06-10 19:11:57,786 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.orm - Query returned successfully!
</pre></div></div>
</div>
<div class="nboutput docutils container">
<div class="prompt empty docutils container">
</div>
<div class="output_area stderr docutils container">
<div class="highlight"><pre>
2024-06-04 00:14:50,611 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 510.676651 s
2024-06-10 19:11:57,830 <span class="ansi-white-intense-fg ansi-bold">INFO</span> cycquery.utils.profile - Finished executing function run_query in 608.537401 s
</pre></div></div>
</div>
<div class="nboutput nblast docutils container">
Expand Down
Loading

0 comments on commit cd3cd8a

Please sign in to comment.