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Update README.md with Vision information
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zoesteier authored Jun 26, 2023
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Expand Up @@ -9,6 +9,10 @@ This repository contains code for the analysis performed in this manuscript.

The CITE-seq data generated in this manuscript are accessible through GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE186078.

The thymus CITE-seq data set can be explored interactively with Vision:
- Positive selection subset: http://s133.cs.berkeley.edu:9001/Results.html
- Full data set: http://s133.cs.berkeley.edu:9002/Results.html

## Analysis notebooks

* __totalVI_AllData/__
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* __Multidimensional_Flow/__
* ```Multidimensional_Flow.ipynb``` Multidimensional flow analysis


* __Vision/__
* ```Vision_AllData.Rmd``` Run Vision to generate session for interactive exploration of the full CITE-seq data set
* ```Vision_PositiveSelection.Rmd``` Run Vision to generate session for interactive exploration of the positive selection subset of the data

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