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130 Open 229 Closed
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Issues list

motif_enrichement_step issue
#539 opened Feb 3, 2025 by WanyingX
Question on how to interpret the "Distance" column in search_space.tsv
#537 opened Jan 25, 2025 by zhli12
Issue with running scenicplus grn_inference eGRN
#532 opened Jan 14, 2025 by zhli12
2
Scalability issues: Timeout error for large data set snakemake pipeline
#529 opened Jan 6, 2025 by jolvhull
8
region-based AUC values are all zero / GSEA warnings
#527 opened Dec 16, 2024 by cosmiccapybara
3
different TFs are discovered from different cistarget databases
#526 opened Dec 15, 2024 by gilgolan73
8
TypeError: unbound method set.union() needs an argument
#525 opened Dec 13, 2024 by Melody-cell
11
Help with bc_transform_func for GEX job in Snakemake
#522 opened Dec 5, 2024 by ptk1601
4
Help with error when running scenicplus tutorial using snakemake in the step score_regions_to_single_gene
#519 opened Dec 2, 2024 by zhli12
Many bugs in different packages compatibility in the previous version and building failed in the new version
#518 opened Dec 1, 2024 by idkaavan
1
Documentation Link Broken in FAQs 2
#515 opened Nov 28, 2024 by ziquangan
1
issue about install SCENIC+ in environment
#514 opened Nov 26, 2024 by Xinlei672
1
Running Scenic+ without Snakemake
#510 opened Nov 18, 2024 by gilgolan73
1
کتابخانه scenicplus نصب نمیشه یک ماهه تلاش میکنم حتی در محیط مجازی کوندا نیز نصب نمیشه ارور زیر رو میده لطفا کری کنید بشه کتابخانه رو نصب کرد
#507 opened Nov 17, 2024 by sajadfatahi
2
کتابخانه نصب نمیشه یک ماهه تلاش میکنم حتی در محیط مجازی کوندا نیز نصب نمیشه
#506 opened Nov 17, 2024 by sajadfatahi
1
Error in running cell_topic_heatmap
#501 opened Nov 7, 2024 by realmungmung
1
How to run SCENIC+ with Signac processed data
#499 opened Nov 4, 2024 by zhli12
3
Stuck at the AUCell_direct. (insufficient memory, with 1Tb of RAM)
#498 opened Nov 1, 2024 by JinKyu-Cheong
3
InvalidIndexError: (slice(None, None, None), 30751) while using coverage plot
#493 opened Oct 25, 2024 by yojetsharma
7
Error in rule get_search_space: jobid: 11 second
#492 opened Oct 24, 2024 by vcleon88
4
Error in rule get_search_space: jobid: 11
#491 opened Oct 24, 2024 by vcleon88
1
plot_rss problem
#487 opened Oct 18, 2024 by GGboy-Zzz
1
adata.raw overwritten with normalized counts in SCENIC+ pipeline
#484 opened Oct 17, 2024 by cjiang310437
1
SCENIC+ fails to install due to pybigtools build failure
#479 opened Oct 10, 2024 by dmalzl
7
Issue with pycisTopic on human cerebellum single-cell multiome data on HPC Fedora
#475 opened Oct 2, 2024 by Stack7
2
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