Merge pull request #8 from all-of-us/kvg_pggb_mamba

Switched to libmamba environment solver
all-of-us · Oct 30, 2023 · be77c09 · be77c09
2 parents a9a1920 + 8a07fe2
commit be77c09
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/docker/pggb/Dockerfile b/docker/pggb/Dockerfile
@@ -4,10 +4,14 @@ MAINTAINER William T Harvey
 
 COPY ./environment.yml /
 
+RUN conda update -n base conda && \
+        conda install -n base conda-libmamba-solver && \
+        conda config --set solver libmamba
+
 RUN conda env create -f /environment.yml && conda clean -a
 
 ENV LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/opt/conda/envs/pggb/lib/
 
 ENV PATH=/opt/conda/envs/pggb/bin/:${PATH}
 
-RUN echo "source activate pggb" > ~/.bashrc
+RUN echo "source activate pggb" > ~/.bashrc