Make sure to pass in arguments needed for updated coordinate integration

angelolab · May 30, 2024 · 3b8839a · 3b8839a
1 parent be3d08f
commit 3b8839a
Showing 1 changed file with 8 additions and 2 deletions.
diff --git a/templates/maldi-pipeline.ipynb b/templates/maldi-pipeline.ipynb
@@ -466,7 +466,13 @@
    },
    "outputs": [],
    "source": [
-    "image_data = extraction.coordinate_integration(peak_df=peak_df, imz_data=imz_data)"
+    "image_data = extraction.coordinate_integration(\n",
+    "    peak_df=peak_df,\n",
+    "    l_ips_r=l_ips_r,\n",
+    "    r_ips_r=r_ips_r,\n",
+    "    peak_widths_height=peak_widths_height,\n",
+    "    imz_data=imz_data,\n",
+    ")"
    ]
   },
   {
@@ -598,7 +604,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.1"
+   "version": "3.11.6"
   },
   "vscode": {
    "interpreter": {