update

aristoteleo · Aug 31, 2020 · 9a4ed0f · 9a4ed0f
1 parent 9559ba4
commit 9a4ed0f
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/dynamo/tools/dynamics.py b/dynamo/tools/dynamics.py
@@ -442,12 +442,12 @@ def dynamics(
                     vel_U = vel.vel_u(U_) if has_splicing else np.nan
                     vel_S = vel.vel_s(U_, S_) if has_splicing else np.nan
                     vel_N = vel.vel_u(U)
-                    vel_T = vel.vel_u(S)  # S - U?
+                    vel_T = vel.vel_u(S)  # don't consider splicing
                 else:
                     vel_U = vel.vel_u(U) if has_splicing else np.nan
                     vel_S = vel.vel_s(U, S) if has_splicing else np.nan
                     vel_N = vel.vel_u(U_)
-                    vel_T = vel.vel_s(U_, S_)
+                    vel_T = vel.vel_u(S_)  # don't consider splicing
             else:
                 vel_U = vel.vel_u(U)
                 vel_S = vel.vel_s(U, S)
@@ -545,12 +545,12 @@ def dynamics(
                 vel_U = vel.vel_u(U_) if has_splicing else np.nan
                 vel_S = vel.vel_s(U_, S_) if has_splicing else np.nan
                 vel_N = vel.vel_u(U)
-                vel_T = vel.vel_u(S - U)  # S - U?
+                vel_T = vel.vel_u(S)  # don't consider splicing
             else:
                 vel_U = vel.vel_u(U) if has_splicing else np.nan
                 vel_S = vel.vel_s(U, S) if has_splicing else np.nan
                 vel_N = vel.vel_u(U_)
-                vel_T = vel.vel_s(U_, S_)
+                vel_T = vel.vel_u(S_)  # don't consider splicing
 
             vel_P = vel.vel_p(S, P)
 

diff --git a/requirements.txt b/requirements.txt
@@ -3,7 +3,7 @@ pandas>=0.25.1
 scipy>=1.0
 scikit-learn>=0.19.1
 cvxopt>=1.2.3
-anndata>=0.7.1
+anndata>=0.7.4
 loompy>=3.0.5
 matplotlib>=3.1.0
 trimap>=1.0.11