Tests for IUPAC processing fixed

arq5x · May 25, 2015 · cc963ef · cc963ef
1 parent ab600e6
commit cc963ef
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Showing 3 changed files with 9 additions and 2 deletions.
diff --git a/test/getfasta/test-getfasta.sh b/test/getfasta/test-getfasta.sh
@@ -88,7 +88,7 @@ AGCTYRWSKMDVHBXN
 agctyrwskmdvhbxn" > exp
 $BT getfasta  -fi test.iupac.fa -bed test.iupac.bed -fo - > obs
 check obs exp
-rm obs exp
+rm obs exp test.iupac.fa.fai
 
 
 # test IUPAC revcomp
@@ -100,4 +100,5 @@ NXVDBHKMSWYRAGCT
 nxvdbhkmswyragct" > exp
 $BT getfasta  -fi test.iupac.fa -bed test.iupac.bed -s -fo - > obs
 check obs exp
-rm obs exp
+rm obs exp test.iupac.fa.fai
+
diff --git a/test/getfasta/test.iupac.bed b/test/getfasta/test.iupac.bed
@@ -0,0 +1,2 @@
+1	0	16	1	1000	-
+2	0	16	1	1000	-
diff --git a/test/getfasta/test.iupac.fa b/test/getfasta/test.iupac.fa
@@ -0,0 +1,4 @@
+>1
+AGCTYRWSKMDVHBXNACGT
+>2
+agctyrwskmdvhbxnacgt