missing test files

arq5x · Sep 3, 2019 · eb4cb83 · eb4cb83
1 parent 04dd739
commit eb4cb83
Show file tree

Hide file tree

Showing 6 changed files with 44 additions and 0 deletions.
diff --git a/test/bamtofastq/test2.sam b/test/bamtofastq/test2.sam
@@ -0,0 +1,29 @@
+@HD	VN:1.0	GO:none	SO:coordinate
+@SQ	SN:chr1	LN:249250621
+paired-1	65	chr1	1	60	30M	*	0	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD	MD:Z:50
+paired-1	129	chr1	1	60	30M	*	0	0	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE	MD:Z:50
+unpaired-1	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+paired-2	129	chr1	1	60	30M	*	0	0	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MD:Z:50
+paired-2	65	chr1	1	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+unpaired-2	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+unpaired-3	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+unpaired-4	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+unpaired-5	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+unpaired-6	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+paired-3	129	chr1	1	60	30M	*	0	0	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MD:Z:50
+paired-3	65	chr1	2	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-3	65	chr1	3	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-3	65	chr1	4	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-3	65	chr1	5	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-3	65	chr1	6	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+unpaired-7	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+unpaired-8	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+unpaired-9	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+paired-4	65	chr1	1	60	30M	*	0	0	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MD:Z:50
+paired-4	129	chr1	2	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-4	129	chr1	3	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-4	129	chr1	4	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+paired-4	129	chr1	5	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
+unpaired-10	100	chr1	1	60	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+paired-5	129	chr1	1	60	30M	*	0	0	TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	FFFFFFFFFFFFFFFFFFFFFFFFFFFFFF	MD:Z:50
+paired-5	65	chr1	1	60	30M	*	0	0	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH	MD:Z:50
diff --git a/test/complement/issue_503.bed b/test/complement/issue_503.bed
@@ -0,0 +1,4 @@
+chr1	1	100	feature1	0	+
+chr1	100	200	feature2	0	+
+chr1	150	500	feature3	0	-
+chr1	900	950	feature4	0	-
diff --git a/test/complement/issue_503.genome b/test/complement/issue_503.genome
@@ -0,0 +1,3 @@
+chr1	1000
+chr2	1000
+chr3	1000
diff --git a/test/intersect/exons.issue750.bed b/test/intersect/exons.issue750.bed
@@ -0,0 +1,3 @@
+chr1	0	100	exon1	1	+
+chr1	200	300	exon2	2	-
+
diff --git a/test/intersect/split.issue750.bam b/test/intersect/split.issue750.bam
diff --git a/test/intersect/split.issue750.sam b/test/intersect/split.issue750.sam
@@ -0,0 +1,5 @@
+@HD	VN:1.0	GO:none	SO:coordinate
+@SQ	SN:chr1	LN:249250621
+one_block_one_exon_30bp	16	chr1	1	40	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+one_block_one_exon_20bp	16	chr1	81	40	30M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50
+two_blocks_two_exons	16	chr1	91	40	10M100N20M	*	0	0	GAAGGCCACCGCCGCGGTTATTTTCCTTCA	CCCDDB?=FJIIJIGFJIJHIJJJJJJJJI	MD:Z:50