Minor fixes

src/bedToBam/bedToBam.cpp

@@ -53,7 +53,7 @@ int bedtobam_main(int argc, char* argv[]) {
     string bedFile = "stdin";
     string genomeFile;
 
-    unsigned int mapQual = 255;
+    int mapQual = 255;
 
     bool haveBed         = true;
     bool haveGenome      = false;

src/bedpeToBam/bedpeToBam.cpp

@@ -54,7 +54,7 @@ int bedpetobam_main(int argc, char* argv[]) {
     string bedpeFile = "stdin";
     string genomeFile;
 
-    unsigned int mapQual = 255;
+    int mapQual = 255;
 
     bool haveBedPE         = true;
     bool haveGenome      = false;

src/fisher/kfunc.c

@@ -243,7 +243,7 @@ double kt_fisher_exact(long long n11, long long n12, long long n21, long long n2
     *two = left + right;
     if (*two > 1.) *two = 1.;
     // adjust left and right
-    if (abs((long) (i - n11)) < abs((long) (j - n11))) right = 1. - left + q;
+    if (labs((long) (i - n11)) < labs((long) (j - n11))) right = 1. - left + q;
     else left = 1.0 - right + q;
     *_left = left; *_right = right;
     return q;

src/split/splitBed.cpp

@@ -148,7 +148,7 @@ std::FILE* BedSplit::saveFileChunk(std::string& filename,size_t file_index)
 
     char tmp[10];
     filename.assign(this->outfileprefix);
-    sprintf(tmp,"%05d",(file_index+1));
+    sprintf(tmp,"%05zu",(file_index+1));
     filename.append(".").append(tmp).append(".bed");
     FILE* out = fopen(filename.c_str(),"w");
     if(out==NULL)

src/utils/BamTools/src/api/internal/io/HostAddress_p.cpp

@@ -263,7 +263,7 @@ bool HostAddress::operator<(const HostAddress& other) const {
     // if self is IPv4
     if ( m_protocol == HostAddress::IPv4Protocol ) {
         if ( other.m_protocol == HostAddress::IPv4Protocol )
-            return m_ip4Address < m_ip4Address;
+            return m_ip4Address < other.m_ip4Address;
     }
 
     // if self is IPv6