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Add version in usage information + command to check gzipped files #10

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merged 2 commits into from
Sep 23, 2013

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chapmanb
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Aaron;
This small patch adds versioning for grabix into the usage. This allows me to check the version with CloudBioLinux and ensure we've got the latest and greatest.

I'm hoping to use this for indexing into bgzipped FASTQ files and need the installed grabix to have the no-header initialization fixes from a couple of weeks ago.

On a semi-related topic, do you know of any good ways to apply this approach to indexing BAMs to split into parts, rather than by location? Is that in your plans for grabix? (whoops, just saw #2)

I also added a small utility to check if a file is bgzipped, allowing defensive programming to distinguish gzipped and bgzipped inputs.

@arq5x
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arq5x commented Sep 23, 2013

Awesome, thanks Brad!

arq5x added a commit that referenced this pull request Sep 23, 2013
Add version in usage information + command to check gzipped files
@arq5x arq5x merged commit abc76b7 into arq5x:master Sep 23, 2013
@arq5x
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arq5x commented Sep 23, 2013

Also, BAM support is in the vision, but I just haven't had time to work on it...(like many other things).

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2 participants