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* NEWS.org (Changes in 0.3.0): New section.
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#+TITLE: ccwl NEWS – History of user-visible changes | ||
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Copyright © 2021 Arun Isaac <[email protected]> | ||
Copyright © 2021, 2024 Arun Isaac <[email protected]> | ||
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* Changes in 0.3.0 (since 0.2.0) | ||
** Features | ||
*** New ~array~ construct to specify array types | ||
*** Allow specification of array input item separators | ||
*** New pass-through ~identity~ construct | ||
*** New scattering ~scatter~, ~scatter-cross~ and ~scatter-nested-cross~ constructs | ||
*** New ~#:stdout~ and ~#:stderr~ parameters in commands | ||
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*** Support staging input files | ||
*** Support returning command objects, not just workflow objects, from ccwl files | ||
*** Allow literal values as arguments | ||
*** Add message requesting users report uncaught exceptions as bugs | ||
*** Allow steps with expressions that evaluate to commands | ||
*** Allow steps with unspecified default arguments | ||
*** Support specifying command requirements | ||
*** Tolerate prefixed strings in ~#:run~ parameters of commands | ||
*** Allow calling workflows inside other workflows | ||
*** Deprecate auto-connection of single-input commands | ||
** Compiler error messages | ||
ccwl now comes with significantly better error messages that highlight | ||
the exact context of errors in workflow descriptions. | ||
*** Error out if arguments have been supplied more than once | ||
*** Error out when ccwl file does not return supported object | ||
*** Error out when unknown keys were passed to rename | ||
*** Error out when workflow syntax is not recognized | ||
*** Error out when body of workflow has multiple expressions | ||
*** Error out on unrecognized keyword arguments to ~command~, ~input~ or ~output~ | ||
*** Error out on unexpected extra argument to unary keyword argument of ~command~, ~input~ or ~output~ | ||
*** Error out on unexpected positional argument to ~command~, ~input~ or ~output~ | ||
*** Error out when external CWL workflow files do not exist | ||
*** Error out when undefined inputs are used in the ~#:run~ parameter of a command | ||
*** Error out when command is not defined | ||
*** Error out on argument prefixes that are not strings | ||
*** Error out when ~#:other~ and ~#:binding~ parameters are not YAML serializable trees | ||
*** Error out when workflow step is missing required parameters | ||
*** Error out when workflow step does not accept input key | ||
*** Error out when workflow step is supplied with unknown key | ||
*** Error out when ~#:run~ argument to command is invalid | ||
*** Error out when rename mappings are not an alternating sequence of keywords and symbols | ||
** Noteworthy bug fixes | ||
*** Escape all indicator characters when serializing YAML | ||
*** Do not escape backslashes when serializing graphviz dot | ||
*** When key is renamed, rename the corresponding CWL output ID too | ||
*** Rename final workflow output correctly | ||
** Other | ||
*** Serialize atomic YAML dictionary values on the same line | ||
*** Serialize YAML arrays with a single atomic value on the same line | ||
*** New guile-lib dependency for (term ansi-color) | ||
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* Changes in 0.2.0 (since 0.1.0) | ||
** Documentation | ||
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