Update KrakenUniq container version to include missing dependencies (n…

…f-core#5721) * Add Bracken stub, nf-test, version bump * Remove debug TODOs and fix tags * Remove pytests * And the other file * Add nf-test, stub, and version bump bracken combine versions * Fix tags * Add BRACKEN/BUILD module * Apply suggestions from code review Co-authored-by: Carson J Miller <[email protected]> * Add additional output channel for secutiry * Bump container build versions for KrakenUniq --------- Co-authored-by: Carson J Miller <[email protected]>
asp8200 · May 30, 2024 · e385732 · e385732
1 parent 54b51b6
commit e385732
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/modules/nf-core/krakenuniq/build/main.nf b/modules/nf-core/krakenuniq/build/main.nf
@@ -4,8 +4,8 @@ process KRAKENUNIQ_BUILD {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/krakenuniq:1.0.4--pl5321h19e8d03_0':
-        'biocontainers/krakenuniq:1.0.4--pl5321h19e8d03_0' }"
+        'https://depot.galaxyproject.org/singularity/krakenuniq:1.0.4--pl5321h6dccd9a_2':
+        'biocontainers/krakenuniq:1.0.4--pl5321h6dccd9a_2' }"
 
     input:
     tuple val(meta), path(custom_library_dir, stageAs: "library/*"), path(custom_taxonomy_dir, stageAs: "taxonomy"), path(custom_seqid2taxid)

diff --git a/modules/nf-core/krakenuniq/download/main.nf b/modules/nf-core/krakenuniq/download/main.nf
@@ -3,8 +3,8 @@ process KRAKENUNIQ_DOWNLOAD {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/krakenuniq:1.0.4--pl5321h19e8d03_0':
-        'biocontainers/krakenuniq:1.0.4--pl5321h19e8d03_0' }"
+        'https://depot.galaxyproject.org/singularity/krakenuniq:1.0.4--pl5321h6dccd9a_2':
+        'biocontainers/krakenuniq:1.0.4--pl5321h6dccd9a_2' }"
 
     input:
     val pattern

diff --git a/modules/nf-core/krakenuniq/preloadedkrakenuniq/main.nf b/modules/nf-core/krakenuniq/preloadedkrakenuniq/main.nf
@@ -4,8 +4,8 @@ process KRAKENUNIQ_PRELOADEDKRAKENUNIQ {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/krakenuniq:1.0.4--pl5321h19e8d03_0':
-        'biocontainers/krakenuniq:1.0.4--pl5321h19e8d03_0' }"
+        'https://depot.galaxyproject.org/singularity/krakenuniq:1.0.4--pl5321h6dccd9a_2':
+        'biocontainers/krakenuniq:1.0.4--pl5321h6dccd9a_2' }"
 
     input:
     tuple val(meta), path(sequences)