utils

utils/split_reads/split_reads.md

@@ -7,8 +7,11 @@ https://bioinf.shenwei.me/seqkit/usage/
 ### Input files:
 
 CELL3326_S16_L001_R1_001.fastq.gz
+
 CELL3326_S16_L001_R2_001.fastq.gz
+
 CELL3326_S16_L002_R1_001.fastq.gz
+
 CELL3326_S16_L002_R2_001.fastq.gz
 
 ### Command:
@@ -20,9 +23,15 @@ seqkit split2 -1 CELL3326_S16_L002_R1_001.fastq.gz -2 CELL3326_S16_L002_R2_001.f
 ### Comment:
 
 seqkit splits the total reads in the original PE files in N chunks (in this case 2 chunks was enough) so that:
-the first read of the original R1 file goes to R1_part_001 file, 
+
+the first read of the original R1 file goes to R1_part_001 file,
+
 the second read of the original R1 file goes to R1_part_002 file, 
-the third read of the original R1 file goes to R1_part_001 file, 
+
+the third read of the original R1 file goes to R1_part_001 file,
+
 the fourth read of the original R1 file goes to R1_part_002 file and so on.
+
 The same goes for R2 reads.
+
 R1 and R2 reads are matched in R1_part_001 and R2_part_001 files, as well as in R1_part_002 and R2_part_001.