Included Scripts

Scripts	Description	Args
Isolate_report_builder.Rmd	R Markdown script to build a pdf report on a per isolate basis for the Ashe long read pipeline
snp_tree_builder.R	R script used to create phylogenetic trees based on SNPs rather than evolutionary distance
tree_builder.R	Base R script that snp_tree_builder is based off of
metrics_maker.R	R script used to help automate the SARS-COV2 submission process (depreciated for new script located in VADGS repository)	Rscript metrics_maker.R Masterlist Start_ID End_ID monroe_summary output_filename