markdown-manuscript-template

basic structure for a planning, writing, sharing a scientific manuscript and related code

---

🚧 DOI badge goes here 🚧

Manuscript for @import "_meta/title.md" @import "_meta/authors.md"

pre-print: https://www.bioarxiv.org paper is published and available at journal.com

Abstract: Lorem Ipsum

Repo Organization

• outline.md - outline, overview of the manuscript
• manuscript_v1.md - full document for compiling into pdf
  • imports sections of text
• writing_sections/ - text for the manuscript split into chapters
• figures/ - output files for figures
• publish/ - compiled pdfs, html files
• bib/ - bibliography files
• data/ - raw data sources
• code/ - code required to perform analysis, generate figures
  • ( consider saving pre-trained models, additional documentation also )
• _planning/ - to-do list for work in progress items
  • can remove from final main branch
• _archive/
  • can remove from final main branch

Main plots

• Figure 1
• Figure 2

Data sources

source	description
the moon	a list of rock diameters
the earth	a list of rock weights

Code

Associated code is present in the following repositories

Prerequisites

You may need to install the following dependencies

Install

Supplemental plots

• Figure S1
• Figure S2

Contact info

submit issues (here), email ([email protected]) for questions

License

(license name here)