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PythonFZ committed Dec 9, 2024
1 parent 816366a commit 3a23e2f
Showing 1 changed file with 49 additions and 0 deletions.
49 changes: 49 additions & 0 deletions mlipx/nodes/adsorption.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,7 @@
import ase
import ase.io as aio
import ase.optimize as opt
import numpy as np
import plotly.graph_objects as go
import zntrack

Expand Down Expand Up @@ -214,6 +215,8 @@ def compare(cls, *nodes: "RelaxAdsorptionConfigs") -> ComparisonResults:

relax_figures = {}

offset = 0

for key in nodes[0].relaxations:
for node in nodes:
traj = node.relaxations[key]
Expand Down Expand Up @@ -252,18 +255,64 @@ def compare(cls, *nodes: "RelaxAdsorptionConfigs") -> ComparisonResults:
x=list(range(len(energies))),
y=energies,
name=node.name.replace(f"_{cls.__name__}", ""),
customdata=np.stack(
[np.arange(len(energies)) + offset], axis=1
),
mode="lines+markers",
)
)

fig.update_layout(
{
"plot_bgcolor": "rgba(0, 0, 0, 0)",
"paper_bgcolor": "rgba(0, 0, 0, 0)",
"yaxis_title": "Adsorption Energy / a.u.",
"xaxis_title": "Step",
}
)
fig.update_xaxes(
showgrid=True,
gridwidth=1,
gridcolor="rgba(120, 120, 120, 0.3)",
zeroline=False,
)
fig.update_yaxes(
showgrid=True,
gridwidth=1,
gridcolor="rgba(120, 120, 120, 0.3)",
zeroline=False,
)

relax_figures[config_site if config_site else config_type] = fig

full_traj.extend(traj)
offset += len(traj)
ads_e[node.name.replace(f"_{cls.__name__}", "")] = node.ads_energies

fig = go.Figure()
for key, val in ads_e.items():
fig.add_trace(go.Bar(x=list(val.keys()), y=list(val.values()), name=key))

fig.update_layout(
{
"plot_bgcolor": "rgba(0, 0, 0, 0)",
"paper_bgcolor": "rgba(0, 0, 0, 0)",
"yaxis_title": "Adsorption Energy / a.u.",
}
)
fig.update_xaxes(
showgrid=True,
gridwidth=1,
gridcolor="rgba(120, 120, 120, 0.3)",
zeroline=False,
)
fig.update_yaxes(
showgrid=True,
gridwidth=1,
gridcolor="rgba(120, 120, 120, 0.3)",
zeroline=False,
)

relax_figures["adsorption_energies"] = fig

return {"frames": full_traj, "figures": relax_figures}

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