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111 Open 1,911 Closed
111 Open 1,911 Closed
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Issues list

Help with troubleshooting qiime dada2 denoise-paired error. [NAs produced by integer overflow...is there a fix?]
#2076 opened Jan 15, 2025 by aron1014
4
Explaining discrepancies in microbiome composition caused by changes in sequence files and denoising methods.
#2075 opened Jan 13, 2025 by emankhalaf
R Encountering Issues When Processing PacBio Revio 16S Data with the DADA2 Pipeline
#2074 opened Jan 9, 2025 by emankhalaf
4
Following ITS dada2 cutadapt trimming, why is a minimum length of 50 used?
#2073 opened Jan 8, 2025 by kdbchau
3
What do the filtN files do?
#2072 opened Jan 8, 2025 by kdbchau
7
missing upper taxonomic rank although genus/species are detected in SILVA 138.
#2070 opened Jan 6, 2025 by marwa38
8
assignTaxonomic() never ends with UNITE reference dataset
#2069 opened Jan 3, 2025 by danielsangarci
3
Problem with long vectors using Pacbio long reads
#2066 opened Dec 17, 2024 by BigFatPandar
1
Silva 138.2 reference fastas not at species level for the former Lactobacillus genus
#2065 opened Dec 2, 2024 by inespradal
1
How long does assigntTaxonomoy takes with UNITE database?
#2064 opened Nov 27, 2024 by sadia-marjia
1
Take too long time to runing Taxonomy using UNITE database
#2063 opened Nov 27, 2024 by Danyang1111
2
Error rates could not be estimated (this is usually because of very few reads). Error in getErrors(err, enforce = TRUE) : Error matrix is NULL.
#2062 opened Nov 23, 2024 by Yaping361
1
Running DADA2 on clusters with pool option -- run of memory
#2061 opened Nov 22, 2024 by emankhalaf
8
Long Run Time for Qiime DADA2 Paired-End Denoising
#2058 opened Nov 19, 2024 by zbaida-achraf
1
Error at mergePairs step: table(pairdf$forward, pairdf$reverse) : attempt to make a table with >= 2^31 elements
#2055 opened Nov 16, 2024 by Anto007
3
nbases argument ignored?
#2054 opened Nov 15, 2024 by hjarnek
5
DADA2 Error Rate Plots - is this okay?
#2052 opened Nov 13, 2024 by suminayeoh
1
General question about pseudo-pooling
#2047 opened Nov 1, 2024 by cjfields
1
Error estimating error rates and plotting quality profiles
#2045 opened Oct 23, 2024 by Guillermouceda
6
DADA2 ITS trimming question
#2044 opened Oct 22, 2024 by UniAlberta
4
How does a small database affect the taxonomic assignment?
#2023 opened Sep 18, 2024 by Fmicro23
1
truncLenKeep enhancement
#2020 opened Sep 15, 2024 by LukeLikesDirt
3
DADA2 analysis for two different platforms MISEQ and Novaseq -Merging of sequence table
#2018 opened Sep 13, 2024 by Jayakanthankk
3
Parameters optimal to produce COI exact variants.
#2015 opened Sep 10, 2024 by aimirza
4
Merged files, where should I start in the pipeline and how?
#2012 opened Sep 5, 2024 by seqlt
2
ProTip! Exclude everything labeled bug with -label:bug.