now yes.

bigbio · Nov 22, 2024 · 09e83f1 · 09e83f1
1 parent 3b58ea9
commit 09e83f1
Showing 1 changed file with 1 addition and 12 deletions.
diff --git a/.github/workflows/conda-build.yml b/.github/workflows/conda-build.yml
@@ -31,15 +31,4 @@ jobs:
         conda build purge-all
         conda config --set solver libmamba
         conda config --set channel_priority strict
-        conda build recipe --suppress-variables --override-channels --channel conda-forge --channel bioconda --no-anaconda-upload --output-folder ./
-        mamba install ./noarch/quantms-utils-0.0.14-py_0.tar.bz2 --update-all
-        mamba env update --file environment.yml
-        conda list
-
-    - name: Download test data
-      run: |
-        wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML
-        wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML
-    - name: Test percolator ms2rescore
-      run: |
-        quantmsutilsc ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
+        conda build recipe --suppress-variables --override-channels --channel conda-forge --channel bioconda --no-anaconda-upload --output-folder ./