rolloback to ms2rescore 3.0.3 with fixed versions

bigbio · Nov 21, 2024 · 4ecfad8 · 4ecfad8
1 parent dd36f48
commit 4ecfad8
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/.github/workflows/conda-build.yml b/.github/workflows/conda-build.yml
@@ -47,4 +47,5 @@ jobs:
         wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML
     - name: Test percolator ms2rescore
       run: |
+        conda activate quantmsutils
         quantmsutilsc ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05