rolloback to ms2rescore 3.0.3 with fixed versions

bigbio · Nov 21, 2024 · c4bc501 · c4bc501
1 parent 7165cb7
commit c4bc501
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Showing 4 changed files with 11 additions and 5 deletions.
diff --git a/environment.yml b/environment.yml
@@ -12,5 +12,6 @@ dependencies:
   - numpy
   - pyarrow
   - pip
-  - pip:
-      - ms2rescore=3.1.3
+  - ms2rescore=3.0.3
+  - deepLC=2.2.38
+  - ms2pip=4.0.0
diff --git a/pyproject.toml b/pyproject.toml
@@ -33,10 +33,12 @@ python = ">=3.8,<3.12"
 click = "*"
 sdrf-pipelines = ">=0.0.31"
 pyopenms = "*"
-ms2rescore = "3.1.3"
+ms2rescore = "3.0.3"
 pandas = "*"
 numpy = "*"
 pyarrow = "*"
+psm-utils = "0.8.3"
+deepLC = "2.2.38"
 
 [tool.poetry.urls]
 GitHub = "https://github.com/bigbio/quantms-utils"

diff --git a/recipe/meta.yaml b/recipe/meta.yaml
@@ -28,7 +28,9 @@ requirements:
     - pandas
     - numpy
     - pyarrow
-    - ms2rescore==3.1.3
+    - ms2rescore==3.0.3
+    - deepLC==2.2.38
+    - ms2pip==4.0.0
 test:
   imports:
     - quantmsutils

diff --git a/requirements.txt b/requirements.txt
@@ -4,4 +4,5 @@ pyopenms
 ms2rescore==3.1.3
 pandas
 numpy
-pyarrow
+pyarrow
+deepLC
-Original file line number
+Diff line change
@@ Expand Up / @@ -4,4 +4,5 @@ pyopenms @@
     ms2rescore==3.1.3
     pandas
     numpy
-    pyarrow
+    pyarrow
+    deepLC