predict conductance functionality

bigginlab · Apr 9, 2024 · f9c7087 · f9c7087
1 parent 3ca6f54
commit f9c7087
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/PoreAnalyser/conductance.py b/PoreAnalyser/conductance.py
@@ -48,7 +48,7 @@ def bullk_conduct(z,a,b, conduct=bulk_conductivity):
     conduct = 1/R # * bulk_conductivity
     return conduct, R_vec
 
-def no_bulk_conduct(z,a,b, popt, conduct=bulk_conductivity, plot=True, shift_bond=1.85):
+def no_bulk_conduct(z,a,b, popt, conduct=bulk_conductivity, plot=False, shift_bond=1.85):
     '''
     Calculate the conductance of a pore using a conductivity model 
     '''

diff --git a/PoreAnalyser/poreanalyser.py b/PoreAnalyser/poreanalyser.py
@@ -311,11 +311,11 @@ def conductance_estimation(self, index_model=0, f_size=15):
         ax[0].set_title('Conductivity along pore axis', fontsize=f_size, loc='center')
         ax[1].set_title('Resistance along pore axis', fontsize=f_size, loc='center')
         ax[0].set_xlabel("z ($\AA$)", fontsize=f_size)
-        ax[0].set_ylabel(r"$\kappa$(a,b)/$\kappa_{bulk}$", fontsize=f_size)
+        ax[0].set_ylabel(r"$\kappa$(a,b)/\kappa_{bulk}$", fontsize=f_size)
         ax[1].set_xlabel("z ($\AA$)", fontsize=f_size)
         ax[1].set_ylabel(r"Resistance ($G\Omega$)", fontsize=f_size)
         ax[0].tick_params(axis='both', which='major', labelsize=f_size)
         ax[1].tick_params(axis='both', which='major', labelsize=f_size)
-        fig.tight_layout()
+        #fig.tight_layout()
         plt.show()
         return hole1/pS, pf1/pS, hole_c/pS, pf1_c/pS, fig