Restrict snappy pull-raw-data to FASTQ files
#118
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Note: The default behavior might address some of the corner-cases in #62, as it is not based on the library name. It at least download all data marking the library_name. |
…g directories: --use-library-name.
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closes #29 , closes #113
Changes
snappy pull-raw-datato FASTQ files. Default behavior: looks for FASTQ file names that contain the sample identifier. Otherwise, it looks for path in SODAR that contain the library names (e.g., 'P001-N1-DNA1-WGS1').pull-raw-dataaspull-all-data. As the name suggests it will download all data associated with a sample from SODAR.