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try to restore group_humann2_uniref_abundances_to_go recipe #53474

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try to restore group_humann2_uniref_abundances_to_go recipe #53474

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e03d59c
try to restore group_humann2_uniref_abundances_to_go recipe
bernt-matthias Jan 25, 2025
93b273a
add pin_subpackage
bernt-matthias Jan 25, 2025
5312d87
remove from blacklist
bernt-matthias Jan 25, 2025
c8b54f2
try wo goatools
bernt-matthias Jan 25, 2025
1109c56
patch URL
bernt-matthias Jan 25, 2025
f50f010
readd goatools
bernt-matthias Jan 25, 2025
e2e8906
ping goatools
bernt-matthias Jan 25, 2025
23aeeff
pin goatools to 0.6.10
bernt-matthias Jan 25, 2025
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1 change: 0 additions & 1 deletion build-fail-blacklist
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Original file line number Diff line number Diff line change
Expand Up @@ -216,7 +216,6 @@ recipes/bolt-lmm
recipes/unitig-counter
recipes/spydrpick
recipes/bctools
recipes/group_humann2_uniref_abundances_to_go
recipes/isonclust2
recipes/sibelia
recipes/var-agg
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10 changes: 8 additions & 2 deletions recipes/group_humann2_uniref_abundances_to_go/meta.yaml
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Expand Up @@ -5,16 +5,22 @@ package:
source:
md5: a78d947cfff8e76297840dd6ce8bfe7f
url: https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO/archive/v1.3.0.zip
patches:
# xref https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO/issues/12#issuecomment-2613954247
- url.patch

build:
number: 1
number: 2
noarch: generic
run_exports:
- {{ pin_subpackage("group_humann2_uniref_abundances_to_go", max_pin="x.x") }}


requirements:
run:
- python <3
- humann2
- goatools
- goatools =0.6.10
- wget

test:
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14 changes: 14 additions & 0 deletions recipes/group_humann2_uniref_abundances_to_go/url.patch
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@@ -0,0 +1,14 @@
diff -ruN group_humann2_uniref_abundances_to_GO-1.3.0/src/group_humann2_uniref_abundances_to_GO_download_datasets.sh group_humann2_uniref_abundances_to_GO-1.3.0_org/src/group_humann2_uniref_abundances_to_GO_download_datasets.sh
--- group_humann2_uniref_abundances_to_GO-1.3.0/src/group_humann2_uniref_abundances_to_GO_download_datasets.sh 2025-01-25 13:38:40.590388314 +0100
+++ group_humann2_uniref_abundances_to_GO-1.3.0_org/src/group_humann2_uniref_abundances_to_GO_download_datasets.sh 2019-05-02 14:29:33.000000000 +0200
@@ -17,7 +17,7 @@

if [ ! -f $humann2_uniref_go ]; then
echo "Download humann2 correspondance between Uniref50 and GO"
- wget https://github.com/biobakery/humann/raw/1bb2639903be9a748c2e2e6f5287a48c3a524cc9/humann/data/misc/map_infogo1000_uniref50.txt.gz
+ wget https://bitbucket.org/biobakery/humann2/raw/d1ac153083d48a5384e3b3d3597b9e36b1a4606e/humann2/data/misc/map_infogo1000_uniref50.txt.gz
gunzip map_infogo1000_uniref50.txt.gz
mv "map_infogo1000_uniref50.txt" $humann2_uniref_go
-fi
+fi
\ No newline at end of file
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