remove warnings

bioinfo-chru-strasbourg · Feb 17, 2024 · 27b7876 · 27b7876
1 parent 48ddbe9
commit 27b7876
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Showing 3 changed files with 12 additions and 9 deletions.
diff --git a/howard/objects/database.py b/howard/objects/database.py
@@ -2162,13 +2162,13 @@ def export(self, output_database:str, output_header:str = None, header_in_output
                                     if export_options.get("quote", None):
 
                                         # Polars write dataframe
-                                        pl.from_arrow(d).write_csv(file=f, separator=export_options.get("delimiter", ""), has_header=header, quote=export_options.get("quote", '"'))
+                                        pl.from_arrow(d).write_csv(file=f, separator=export_options.get("delimiter", ""), include_header=header, quote_char=export_options.get("quote", '"'))
 
                                     # Without quote option
                                     else:
 
                                         # Polars write dataframe
-                                        pl.from_arrow(d).write_csv(file=f, separator=export_options.get("delimiter", ""), has_header=header, quote_style="never")
+                                        pl.from_arrow(d).write_csv(file=f, separator=export_options.get("delimiter", ""), include_header=header, quote_style="never")
 
                                 # JSON format
                                 elif export_options.get("format") in ["JSON"]:

diff --git a/howard/tools/databases.py b/howard/tools/databases.py
@@ -2939,7 +2939,7 @@ def databases_download_dbsnp(assemblies:list, dbsnp_folder:str = DEFAULT_DBSNP_F
                                 """
                             res = db.query(query=query)
                             # Use polars to parallelize csv write and an infile with pgzip to parallelise compression
-                            res.pl().write_csv(f, separator="\t", has_header=False)
+                            res.pl().write_csv(f, separator="\t", include_header=False)
 
                         # Write Parquet
                         if write_parquet:

diff --git a/howard/tools/tools.py b/howard/tools/tools.py
@@ -15,7 +15,7 @@
 import vcf
 import logging as log
 import sys
-import imp
+import importlib
 
 # Import Commons
 from howard.commons import *
@@ -34,14 +34,17 @@
 from howard.tools.from_annovar import *
 
 
-# Import gui only if gooey is installed
+# Import gui only if gooey and wx is installed
 try:
-    imp.find_module('gooey')
-    tool_gui_enable = True
-    from howard.tools.gui import *
+    check_gooey = importlib.util.find_spec("gooey")
+    check_wx = importlib.util.find_spec("wx")
+    tool_gui_enable = check_gooey and check_wx
 except ImportError:
     tool_gui_enable = False
-    #log.warning("Gooey not installed")
+
+if tool_gui_enable:
+    from howard.tools.gui import *
+
 
 # Arguments dict
 arguments = {