improve ressources optimization, docs #4

bioinfo-chru-strasbourg · Jan 21, 2025 · a1dfc1c · a1dfc1c
1 parent e8ef532
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Showing 17 changed files with 39,762 additions and 39,624 deletions.
diff --git a/README.pdf b/README.pdf
diff --git a/RELEASE_NOTES.pdf b/RELEASE_NOTES.pdf
diff --git a/docs/docs.pdf b/docs/docs.pdf
diff --git a/docs/help.configuration.calculation.pdf b/docs/help.configuration.calculation.pdf
diff --git a/docs/help.configuration.pdf b/docs/help.configuration.pdf
diff --git a/docs/help.configuration.prioritization.pdf b/docs/help.configuration.prioritization.pdf
diff --git a/docs/help.parameters.databases.pdf b/docs/help.parameters.databases.pdf
diff --git a/docs/help.parameters.pdf b/docs/help.parameters.pdf
diff --git a/docs/help.pdf b/docs/help.pdf
diff --git a/docs/pdoc/howard/objects/variants.html b/docs/pdoc/howard/objects/variants.html
diff --git a/docs/pdoc/howard/tools/sort.html b/docs/pdoc/howard/tools/sort.html
diff --git a/docs/pdoc/search.js b/docs/pdoc/search.js
diff --git a/docs/tips.pdf b/docs/tips.pdf
diff --git a/docs/user_guide.pdf b/docs/user_guide.pdf
diff --git a/howard/objects/variants.py b/howard/objects/variants.py
diff --git a/plugins/README.pdf b/plugins/README.pdf
diff --git a/tests/test_variants_transcripts.py b/tests/test_variants_transcripts.py
@@ -1914,7 +1914,8 @@ def test_transcripts_create_view_export(output):
                 "transcripts_column": "PZTTranscript",
                 # "transcripts_order": ["column", "file"],
             },
-            ["NR_047526", "NR_036051", "NR_047551", "NM_001005484"],
+            # ["NR_047526", "NR_036051", "NR_047551", "NM_001005484"],
+            ["NR_047519", "NR_036051", "NR_047551", "NM_001005484"],
         ),
         (
             {
@@ -1924,7 +1925,8 @@ def test_transcripts_create_view_export(output):
                 "transcripts_column": "PZTTranscript",
                 # "transcripts_order": ["column", "file"],
             },
-            ["NR_047526", "NR_036051", "NR_047551", "NM_001005484"],
+            # ["NR_047526", "NR_036051", "NR_047551", "NM_001005484"],
+            ["NR_047519", "NR_036051", "NR_047551", "NM_001005484"],
         ),
         (
             {
@@ -1934,7 +1936,8 @@ def test_transcripts_create_view_export(output):
                 "transcripts_column": "PZTTranscript",
                 "transcripts_order": ["column", "file"],
             },
-            ["NR_047526", "NR_036051", "NR_047551", "NM_001005484"],
+            # ["NR_047526", "NR_036051", "NR_047551", "NM_001005484"],
+            ["NR_047519", "NR_036051", "NR_047551", "NM_001005484"],
         ),
         (
             {
@@ -1944,7 +1947,8 @@ def test_transcripts_create_view_export(output):
                 "transcripts_column": "PZTTranscript",
                 "transcripts_order": ["file", "column"],
             },
-            ["NR_047526", "NR_036266", "NM_001346897", "NM_001005484", "NR_024540"],
+            # ["NR_047526", "NR_036266", "NM_001346897", "NM_001005484", "NR_024540"],
+            ["NR_047519", "NR_036266", "NM_001346897", "NM_001005484", "NR_024540"],
         ),
     ],
 )