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Docs #4

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11 tasks done
antonylebechec opened this issue Apr 1, 2023 · 0 comments
Open
11 tasks done

Docs #4

antonylebechec opened this issue Apr 1, 2023 · 0 comments

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@antonylebechec
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antonylebechec commented Apr 1, 2023 •
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Add Documentation (markdown) on:

  • Main readme with:
    • Quick Install
    • Quick command
  • Command line args (with config and param, and "quick" param)
  • Format of input/output files
  • Query
  • Annotation
  • Calculation
  • Prioritization
  • Installation
  • Database download/Preparation
bioinfo-chru-strasbourg pushed a commit that referenced this issue Apr 4, 2023
@antonylebechec
some docs #4
25ee35f
bioinfo-chru-strasbourg pushed a commit that referenced this issue Apr 5, 2023
@antonylebechec
docker download db #3, docs #4, SV #14
0e060bb
bioinfo-chru-strasbourg pushed a commit that referenced this issue May 4, 2023
@antonylebechec
fix args nargs help #35 doc #4
1cf0904
antonylebechec added a commit that referenced this issue May 4, 2023
@antonylebechec
Merge pull request #43 from bioinfo-chru-strasbourg/fix_args_nargs_help
6f219f9 
fix args nargs help #35 doc #4
bioinfo-chru-strasbourg pushed a commit that referenced this issue Jun 1, 2023
@antonylebechec
add Database object #44, fix #45 #4
78aba65
@antonylebechec antonylebechec mentioned this issue Jun 1, 2023
Merged
@antonylebechec antonylebechec mentioned this issue Jun 22, 2023
Merged
antonylebechec added a commit that referenced this issue Jun 22, 2023
@antonylebechec
Merge pull request #66 from bioinfo-chru-strasbourg/add_genome_download
be919a7 
add genomes download #3, docs #4 fixes and cleaning
bioinfo-chru-strasbourg pushed a commit that referenced this issue Jul 24, 2023
@antonylebechec
fix #78 logger #4 docs
ffbe5f5
antonylebechec added a commit that referenced this issue Jul 24, 2023
@antonylebechec
Merge pull request #79 from bioinfo-chru-strasbourg/fix_logger
a2b0b77 
fix #78 logger #4 docs
bioinfo-chru-strasbourg pushed a commit that referenced this issue Dec 8, 2023
@antonylebechec
Add doc, param.json, partition tsv #4 #133 #134
c682159
bioinfo-chru-strasbourg pushed a commit that referenced this issue Dec 9, 2023
@antonylebechec
docs #4, add partition csv variants input format
5c0f111
antonylebechec added a commit that referenced this issue Dec 9, 2023
@antonylebechec
Merge pull request #136 from bioinfo-chru-strasbourg/databases_infos
a90324d 
docs #4, add partition csv variants input format
bioinfo-chru-strasbourg pushed a commit that referenced this issue Feb 7, 2024
@antonylebechec
Add docs and help file generation #4
f5a6aa0
antonylebechec added a commit that referenced this issue Feb 8, 2024
@antonylebechec
Merge pull request #145 from bioinfo-chru-strasbourg/options_and_docs
991ad9a 
Add docs and help file generation #4
bioinfo-chru-strasbourg pushed a commit that referenced this issue Feb 8, 2024
@antonylebechec
User guide draft, help md and README #4
9556414
antonylebechec added a commit that referenced this issue Feb 8, 2024
@antonylebechec
Merge pull request #146 from bioinfo-chru-strasbourg/options_and_docs
12968c1 
User guide draft, help md and README #4
bioinfo-chru-strasbourg pushed a commit that referenced this issue Feb 12, 2024
@antonylebechec
Clear tools config and options, add docs #4, add GUI #140
e28b758
antonylebechec added a commit that referenced this issue Feb 12, 2024
@antonylebechec
Merge pull request #147 from bioinfo-chru-strasbourg/options_and_docs
14e60a0 
Clear tools config and options, add docs #4, add GUI #140
bioinfo-chru-strasbourg pushed a commit that referenced this issue Feb 15, 2024
@antonylebechec
Fix requirements, fix parse_args, add docs #4
f6c17ca
antonylebechec added a commit that referenced this issue Feb 15, 2024
@antonylebechec
Merge pull request #149 from bioinfo-chru-strasbourg/options_and_docs
d565cf5 
Fix requirements, fix parse_args, add docs #4
bioinfo-chru-strasbourg pushed a commit that referenced this issue Feb 20, 2024
@antonylebechec
Add docs #4
a523988
@antonylebechec antonylebechec mentioned this issue Feb 20, 2024
Merged
antonylebechec added a commit that referenced this issue Feb 20, 2024
@antonylebechec
Merge pull request #153 from bioinfo-chru-strasbourg/options_and_docs
5e5999f 
Add docs #4
bioinfo-chru-strasbourg pushed a commit that referenced this issue Mar 4, 2024
@antonylebechec
Add docs #4, clear quick annotation
f821f3b
antonylebechec added a commit that referenced this issue Mar 4, 2024
@antonylebechec
Merge pull request #157 from bioinfo-chru-strasbourg/options_and_docs
5be9fb5 
Add docs #4, clear quick annotation
bioinfo-chru-strasbourg pushed a commit that referenced this issue Mar 4, 2024
@antonylebechec
Docs #4, add icon and change name
cb6d635
antonylebechec added a commit that referenced this issue Mar 4, 2024
@antonylebechec
Merge pull request #158 from bioinfo-chru-strasbourg/options_and_docs
b5d4695 
Docs #4, add icon and change name
bioinfo-chru-strasbourg pushed a commit that referenced this issue Mar 5, 2024
@antonylebechec
Add docs #4 and examples
2148359
antonylebechec added a commit that referenced this issue Mar 5, 2024
@antonylebechec
Merge pull request #159 from bioinfo-chru-strasbourg/options_and_docs
2812dfb 
Add docs #4 and examples
antonylebechec added a commit that referenced this issue Dec 5, 2024
@antonylebechec
Merge pull request #318 from bioinfo-chru-strasbourg/docs_help
51e5fec 
docs #4
antonylebechec added a commit that referenced this issue Dec 6, 2024
@antonylebechec
docs #4
e83f66e
antonylebechec added a commit that referenced this issue Dec 6, 2024
@antonylebechec
Merge pull request #320 from bioinfo-chru-strasbourg/docs_help
555435e 
docs #4
antonylebechec added a commit that referenced this issue Dec 9, 2024
@antonylebechec
fix barcode calculation and other functions with sample to prevent sp…
39886a1 
…ecial characters in name #321, docs #4
@antonylebechec antonylebechec mentioned this issue Dec 9, 2024
Merged
antonylebechec added a commit that referenced this issue Dec 9, 2024
@antonylebechec
fix info/tags rename #307, docs #4
81498ee
antonylebechec added a commit that referenced this issue Dec 9, 2024
@antonylebechec
Merge pull request #323 from bioinfo-chru-strasbourg/fix_rename_info_…
bb96703 
…tags

fix info/tags rename #307, docs #4
antonylebechec added a commit that referenced this issue Dec 11, 2024
@antonylebechec
docs Docs #4
312953e
antonylebechec added a commit that referenced this issue Dec 11, 2024
@antonylebechec
Merge pull request #328 from bioinfo-chru-strasbourg/docs_help
f6bd475 
docs Docs #4
antonylebechec added a commit that referenced this issue Dec 20, 2024
@antonylebechec
Improve docs #4 and setup
e55c1d0
antonylebechec added a commit that referenced this issue Dec 20, 2024
@antonylebechec
Improve docs #4 and setup
54ab325
antonylebechec added a commit that referenced this issue Dec 24, 2024
@antonylebechec
docs Docs #4
350dccf
antonylebechec added a commit that referenced this issue Jan 7, 2025
@antonylebechec
Some docs #4
a70533a
antonylebechec added a commit that referenced this issue Jan 7, 2025
@antonylebechec
Merge pull request #356 from bioinfo-chru-strasbourg/add_interactivity
07b7c74 
Some docs #4
antonylebechec added a commit that referenced this issue Jan 13, 2025
@antonylebechec
Add docs #4
3248abf
antonylebechec added a commit that referenced this issue Jan 13, 2025
@antonylebechec
Merge pull request #364 from bioinfo-chru-strasbourg/docs_and_help
98a73cb 
Add docs #4
antonylebechec added a commit that referenced this issue Jan 17, 2025
@antonylebechec
docs #4
a6ed338
antonylebechec added a commit that referenced this issue Jan 18, 2025
@antonylebechec
Fix fields needed in create annotations view #351, fix interactive #362…
d5dd7a7 
…, docs #4
antonylebechec added a commit that referenced this issue Jan 19, 2025
@antonylebechec
Add sort tool, improve filter tool, docs #4
aacb5da
antonylebechec added a commit that referenced this issue Jan 19, 2025
@antonylebechec
Merge pull request #372 from bioinfo-chru-strasbourg/add_sort_tool
ed05fc2 
Add sort tool, improve filter tool, docs #4
antonylebechec added a commit that referenced this issue Jan 21, 2025
@antonylebechec
improve ressources optimization, docs #4
a1dfc1c
antonylebechec added a commit that referenced this issue Jan 21, 2025
@antonylebechec
Merge pull request #374 from bioinfo-chru-strasbourg/improve_annotati…
db65803 
…ons_view

improve ressources optimization, docs #4
antonylebechec added a commit that referenced this issue Jan 23, 2025
@antonylebechec
fix strict param, add interactive mode #362, add docs #4
49c5a2f
antonylebechec added a commit that referenced this issue Jan 23, 2025
@antonylebechec
Merge pull request #376 from bioinfo-chru-strasbourg/improve_perf
2112a4f 
fix strict param, add interactive mode #362, add docs #4
antonylebechec added a commit that referenced this issue Jan 28, 2025
@antonylebechec
improve NOMEN extraction, including multi patterns or NOMEN, list of …
95303d2 
…NOMEN fields to extract #315, docs #4
antonylebechec added a commit that referenced this issue Jan 28, 2025
@antonylebechec
docs #4
9bf9ff7
antonylebechec added a commit that referenced this issue Jan 29, 2025
@antonylebechec
Fix db bigwig by closing file #295, docs #4
e949673
antonylebechec added a commit that referenced this issue Jan 29, 2025
@antonylebechec
Merge pull request #379 from bioinfo-chru-strasbourg/fix_bw_db
72a9235 
Fix db bigwig by closing file #295, docs #4
antonylebechec added a commit that referenced this issue Jan 31, 2025
@antonylebechec
fix alphamissense header, docs #4
d8634f1
antonylebechec added a commit that referenced this issue Jan 31, 2025
@antonylebechec
Merge pull request #383 from bioinfo-chru-strasbourg/fix-download-alp…
09384b0 
…hamissense

fix alphamissense header, docs #4
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