Updated env

bioinfo-ucsd · Sep 12, 2024 · 6711ebc · 6711ebc
1 parent aafa5ba
commit 6711ebc
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/env.yml b/env.yml
@@ -14,9 +14,10 @@ dependencies:
   - bioconda::picard>=2.27.4
 #   - bioconda::gatk4
   - bioconda::fastqc
-  - bioconda::trim_galore
+  - bioconda::trim-galore
   - bioconda::bowtie2
   - bioconda::woltka
+  - bioconda::bioconductor-phyloseq
 #   - bioconda::multiqc
   # Python
   - conda-forge::python>=3.7

diff --git a/setup_env.sh b/setup_env.sh
@@ -37,4 +37,4 @@ if [ ! -d "$HOME/miniforge3/envs/bootcamp" ]; then
     mamba run -n bootcamp Rscript -e 'IRkernel::installspec(name="R_bootcamp", displayname="R (bootcamp)")'
 fi
 
-echo Done!
+echo Done!