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ENH: initial draft of PR2 fetching code #212

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@mikerobeson mikerobeson commented Jan 6, 2025

This is just a heads up on some simple code to fetch the PR2 reference SSU data.

To do:

  • Add test code.
  • Add taxonomy rank labels?
    • Versions can have different levels of curated taxonomy.
      • Version 5.0.0 has 9 taxonomic ranks:
        • domain | supergroup | division | subdivision | class | order | family | genus | species
      • Earlier versions have 8 taxonomic ranks, etc...
        • kingdom | supergroup | division | class | order | family | genus | species
  • Add code to fetch even older versions?
    • Versions 4.13 and earlier have the SSU data as separate 16S and 18S rRNA files. Can handle this by downloading and merging these files.

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