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Update krona visualization to take into account RDP confidence scores #54

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loic-couderc opened this issue Oct 31, 2017 · 1 comment
Open

Update krona visualization to take into account RDP confidence scores #54

loic-couderc opened this issue Oct 31, 2017 · 1 comment
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@loic-couderc
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RDP assign confidence scores at each level of the taxonomic hierarchy. For the moment this information is lost during the transformation to KRONA representation.
@loic-couderc loic-couderc added this to the Backlog milestone Oct 31, 2017
@loic-couderc
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An import script has been written by KRONA team.
Sadly, we have to make this script aware of abundances data to be able to use it.

Modifying the addByLineage can be a good starting point. This method can receive an optional parameter $magnitude that can fit our needs

@loic-couderc loic-couderc mentioned this issue Nov 14, 2017
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