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[WIP] release 4.0.0#235

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egonw wants to merge 39 commits intoseries/4.0bridgedb/BridgeDb:series/4.0from devel/4.0.0bridgedb/BridgeDb:devel/4.0.0Copy head branch name to clipboard

+589-379

Commits

Commits on Dec 18, 2023

• Towards a first alpha release

  egonw

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  703ef70

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• Just compile

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Commits on Sep 22, 2024

• Fixed Maven central hyperlink in readme

  

  youphendriks

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  egonw

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• 2 tests; valid works, invalid in progress

  

  youphendriks

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• Disabled in progress test

  

  youphendriks

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• Changed name and added "." to JavaDoc.

  

  youphendriks

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• A bit more header clean up

  egonw

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• Mockito added to pomfile

  

  youphendriks

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• Updated the GitHub Action versions

  egonw

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  893b3dd

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• Cleaned test for issue240

  

  youphendriks

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  egonw

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  84a3318

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• added assertNotNull/removed unused dependencies

  

  youphendriks

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  egonw

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  beb1f95

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• Test in the package where datasources can be initialized, solving the null error

  egonw

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  d67f80c

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• Removed a wrong Bioregistry prefix

  egonw

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• Make sure we don't initialize twice (which fails)

  egonw

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• Do not run when not having Java 11 or higher

  egonw

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• Added some syntax highlighting

  egonw

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• BridgeDb Datasources 202407252

  egonw

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• Use https for ChemSpider

  egonw

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• Only initialize if not done already

  egonw

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  04b40cf

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• Fixed a minor typo

  egonw

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  8ea2ccf

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• Mock new datasources, to not cause URL overwrite errors

  egonw

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  d61d170

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• Updated to match the new BridgeDb Datasources version

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• Added Solanum tuberosum

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• Added the missing regexp

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• Added another test

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• Tests may have registered things, so do a more realistic check

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  4cccb3d

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• More precise status message

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  6bf00da

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• Support also https

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  5ee961d

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• More testing

  egonw

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  1f3bf40

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• More updates for the new BridgeDb Datasources release

  egonw

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• Different server id, to address a local ID conflict

  egonw

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• Newer MySQL driver

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• Newer Apache CFX version

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• Maven style

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  25158a0

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• Added a simple test

  egonw

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  27d7b12

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• Restructured and added a mapping test

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• Require minimal versions of Maven and Java

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• Updated Maven Jar plugin

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• Central, updated Felix maven plugin

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