Adapted contamination estimation workflow and BAMutils workflow for s… #5632
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Set up job
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Pull rtcamp/action-slack-notify:v2.0.2
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Checkout github repo (+ download lfs dependencies)
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Checkout LFS objects
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Set up Python 3.7
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Install dependencies
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Test with tox
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Slack Failure Notification
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Post Set up Python 3.7
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Post Checkout github repo (+ download lfs dependencies)
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Complete job
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