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Merge branch 'PMICP_main' of github.com:broadinstitute/long-read-pipe…
validate-dockstore-yaml #747: Commit 5b1aac3 pushed by SHuang-Broad
November 11, 2023 20:18 24s PMICP_main
November 11, 2023 20:18 24s
revise DeepSomatic Pipeline for chrM variant calling
validate-dockstore-yaml #746: Commit 5f18a2d pushed by hangsuUNC
November 10, 2023 14:34 23s hangsu_hifiasm_testing
November 10, 2023 14:34 23s
disable logging as I'm suspecting it's causing issues
validate-dockstore-yaml #745: Commit cfd3821 pushed by SHuang-Broad
November 10, 2023 02:27 25s sh_ont_fc
November 10, 2023 02:27 25s
make monitoring optional; also tune resources a bit
validate-dockstore-yaml #744: Commit c82037e pushed by SHuang-Broad
November 10, 2023 02:25 18s sh_ont_fc_exp
November 10, 2023 02:25 18s
make monitoring optional
validate-dockstore-yaml #743: Commit 52eedfd pushed by SHuang-Broad
November 10, 2023 02:22 18s sh_ont_fc_exp
November 10, 2023 02:22 18s
make monitoring optional
validate-dockstore-yaml #742: Commit 84d65ff pushed by SHuang-Broad
November 10, 2023 01:55 25s sh_ont_fc
November 10, 2023 01:55 25s
debugging echos in plotSVQCMetrics
validate-dockstore-yaml #741: Commit 24bd95c pushed by bshifaw
November 9, 2023 20:55 30s bs_sv_qc_plots_wdlize
November 9, 2023 20:55 30s
beta2 docker name in plotSVQCMetrics
validate-dockstore-yaml #740: Commit 1319b70 pushed by bshifaw
November 9, 2023 20:30 25s bs_sv_qc_plots_wdlize
November 9, 2023 20:30 25s
fixed docker name in plotSVQCMetrics
validate-dockstore-yaml #739: Commit 63c61ea pushed by bshifaw
November 9, 2023 19:37 22s bs_sv_qc_plots_wdlize
November 9, 2023 19:37 22s
changed svlen extention to txt in compileSVstats
validate-dockstore-yaml #738: Commit 7424341 pushed by bshifaw
November 9, 2023 19:18 41s bs_sv_qc_plots_wdlize
November 9, 2023 19:18 41s
added plotting task
validate-dockstore-yaml #737: Commit 291782a pushed by bshifaw
November 9, 2023 19:01 28s bs_sv_qc_plots_wdlize
November 9, 2023 19:01 28s
fix coverage_regex in workflow
validate-dockstore-yaml #736: Commit 0c4b29c pushed by bridgetknight
November 9, 2023 16:42 27s bk_malaria_reports
November 9, 2023 16:42 27s
fix BAM file copy regex
validate-dockstore-yaml #735: Commit 7cbb121 pushed by bridgetknight
November 9, 2023 16:31 29s bk_malaria_reports
November 9, 2023 16:31 29s
fixed coverage_dir parsing
validate-dockstore-yaml #734: Commit 18768f4 pushed by bridgetknight
November 9, 2023 15:34 32s bk_malaria_reports
November 9, 2023 15:34 32s
fix coverage directory parsing
validate-dockstore-yaml #733: Commit 3f8e617 pushed by bridgetknight
November 9, 2023 15:21 36s bk_malaria_reports
November 9, 2023 15:21 36s
add debug statements in WDL command
validate-dockstore-yaml #732: Commit 5baa959 pushed by bridgetknight
November 9, 2023 14:50 29s bk_malaria_reports
November 9, 2023 14:50 29s
fix some inputs and libraries
validate-dockstore-yaml #731: Commit d58be3c pushed by bridgetknight
November 8, 2023 21:37 31s bk_malaria_reports
November 8, 2023 21:37 31s
fix command order
validate-dockstore-yaml #730: Commit aecbefb pushed by bridgetknight
November 8, 2023 21:26 22s bk_malaria_reports
November 8, 2023 21:26 22s
disable logging as I'm suspecting it's causing issues
validate-dockstore-yaml #729: Commit cfd3821 pushed by SHuang-Broad
November 8, 2023 21:21 21s sh_ont_fc
November 8, 2023 21:21 21s
continue hacking
validate-dockstore-yaml #728: Commit c008dba pushed by SHuang-Broad
November 8, 2023 21:16 24s sh_sv_joint
November 8, 2023 21:16 24s
test hack
validate-dockstore-yaml #727: Commit fc65521 pushed by SHuang-Broad
November 8, 2023 20:51 26s sh_sv_joint
November 8, 2023 20:51 26s
new workflow to jointcall SVs with PBSV
validate-dockstore-yaml #726: Commit 75ebe23 pushed by SHuang-Broad
November 8, 2023 18:55 30s sh_sv_joint
November 8, 2023 18:55 30s
new workflow to jointcall SVs with PBSV
validate-dockstore-yaml #725: Commit 6a86fce pushed by SHuang-Broad
November 8, 2023 17:45 31s sh_sv_joint
November 8, 2023 17:45 31s
new workflow to jointcall SVs with PBSV
validate-dockstore-yaml #724: Commit 86c0a4e pushed by SHuang-Broad
November 8, 2023 17:37 34s sh_sv_joint
November 8, 2023 17:37 34s
NAS IO headache
validate-dockstore-yaml #723: Commit 9edd654 pushed by SHuang-Broad
November 8, 2023 16:25 20s sh_ont_fc
November 8, 2023 16:25 20s
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