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validate_dockstore_yaml.yml
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Adapted contamination estimation workflow and BAMutils workflow for s… validate-dockstore-yaml #1961: Commit b090a4a pushed by shadizaheri
January 3, 2025 22:03 2m 40s sz_short_read_contamination
sz_short_read_contamination
January 3, 2025 22:03 2m 40s
Fixed typo in zarr output file. (#484) validate-dockstore-yaml #1960: Commit d07b22c pushed by jonn-smith
December 20, 2024 17:13 28s main
main
December 20, 2024 17:13 28s
Fixed typo in zarr output file. validate-dockstore-yaml #1959: Commit 28208dc pushed by jonn-smith
December 18, 2024 21:28 37s jts_fix_zarr_out_typo
jts_fix_zarr_out_typo
December 18, 2024 21:28 37s
Made zarr conversion optional in SRJointCallGVCFsWithGenomicsDB.wdl (… validate-dockstore-yaml #1958: Commit 0ab9499 pushed by jonn-smith
December 18, 2024 16:16 31s main
main
December 18, 2024 16:16 31s
Made zarr conversion optional in SRJointCallGVCFsWithGenomicsDB.wdl validate-dockstore-yaml #1957: Commit 11ec217 pushed by jonn-smith
December 18, 2024 16:07 32s jts_joint_call_zarr_optional
jts_joint_call_zarr_optional
December 18, 2024 16:07 32s
Added snpeff_db_identifier for Functional annotation. (#482) validate-dockstore-yaml #1956: Commit b169a39 pushed by jonn-smith
December 13, 2024 14:37 25s main
main
December 13, 2024 14:37 25s
Added snpeff_db_identifier for Functional annotation. validate-dockstore-yaml #1955: Commit 4053567 pushed by jonn-smith
December 13, 2024 01:40 31s jts_functional_annotation_species_fix
jts_functional_annotation_species_fix
December 13, 2024 01:40 31s
add shapeit4 pipeline for hidive experiment validate-dockstore-yaml #1954: Commit 98e8ada pushed by hangsuUNC
December 12, 2024 19:23 25s hangsu_phasing_new
hangsu_phasing_new
December 12, 2024 19:23 25s
Reserved more non-heap memory for the JVM when calling HaplotypeCalle… validate-dockstore-yaml #1953: Commit 23ee743 pushed by jonn-smith
December 12, 2024 14:45 28s main
main
December 12, 2024 14:45 28s
SRJointCallGVCFsWithGenomicsDB.wdl now prefers dbsnp_vcf to `know… validate-dockstore-yaml #1952: Commit 5c20523 pushed by jonn-smith
December 12, 2024 04:56 35s main
main
December 12, 2024 04:56 35s
Comment update. validate-dockstore-yaml #1951: Commit 4d8ba8c pushed by jonn-smith
December 11, 2024 23:44 28s jts_hc_memory_fix
jts_hc_memory_fix
December 11, 2024 23:44 28s
Updated mechanism with which to check for map keys. validate-dockstore-yaml #1950: Commit f1e7008 pushed by jonn-smith
December 11, 2024 23:08 20s jts_known_sites_joint_calling_vcf_bed_fix
jts_known_sites_joint_calling_vcf_bed_fix
December 11, 2024 23:08 20s
Forcing a preference in the refmap to dbsnp_vcf for dbsnp file. validate-dockstore-yaml #1949: Commit 24a9afd pushed by jonn-smith
December 11, 2024 22:23 29s jts_known_sites_joint_calling_vcf_bed_fix
jts_known_sites_joint_calling_vcf_bed_fix
December 11, 2024 22:23 29s
Updated SRUtils.BamToFq and SRBamToFq with cram support and bette… validate-dockstore-yaml #1948: Commit b7104df pushed by jonn-smith
December 11, 2024 04:06 34s main
main
December 11, 2024 04:06 34s
Reducing CPU and memory for SRUtils.BamToFq. validate-dockstore-yaml #1947: Commit c5c54b0 pushed by jonn-smith
December 11, 2024 03:56 36s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 11, 2024 03:56 36s
Fixed some memory requirements. Intermediate commit. validate-dockstore-yaml #1946: Commit 2d1c4a4 pushed by jonn-smith
December 11, 2024 03:52 27s jts_hc_memory_fix
jts_hc_memory_fix
December 11, 2024 03:52 27s
Intermediate commit. validate-dockstore-yaml #1945: Commit e938ea6 pushed by jonn-smith
December 10, 2024 23:05 20s jts_hc_memory_fix
jts_hc_memory_fix
December 10, 2024 23:05 20s
BamToFq cpu and ram now 16 cores and 32gb respectively. validate-dockstore-yaml #1944: Commit 6c9064d pushed by jonn-smith
December 10, 2024 18:41 34s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 10, 2024 18:41 34s
Changed how SRUtils.BamToFq operates. validate-dockstore-yaml #1943: Commit 38baee9 pushed by jonn-smith
December 10, 2024 13:27 25s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 10, 2024 13:27 25s
Fixing typo validate-dockstore-yaml #1942: Commit 3b680ce pushed by jonn-smith
December 10, 2024 01:55 23s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 10, 2024 01:55 23s
Fixing optional arg. validate-dockstore-yaml #1941: Commit 135f872 pushed by jonn-smith
December 10, 2024 01:45 24s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 10, 2024 01:45 24s
Fixed typo validate-dockstore-yaml #1940: Commit 552c1c9 pushed by jonn-smith
December 10, 2024 01:33 19s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 10, 2024 01:33 19s
Fixing missing reference file in SRUtils.BamToFq validate-dockstore-yaml #1939: Commit f7c7f49 pushed by jonn-smith
December 10, 2024 01:22 28s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 10, 2024 01:22 28s
Fixed typo validate-dockstore-yaml #1938: Commit 22f8edf pushed by jonn-smith
December 9, 2024 22:46 20s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 9, 2024 22:46 20s
Added optional reference file to SRUtils.BamToFq. validate-dockstore-yaml #1937: Commit 8515e17 pushed by jonn-smith
December 9, 2024 22:32 19s jts_optional_finalize_bam2fastq
jts_optional_finalize_bam2fastq
December 9, 2024 22:32 19s