Fixing optional arg.

broadinstitute · Dec 10, 2024 · 135f872 · 135f872
1 parent 552c1c9
commit 135f872
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/wdl/tasks/Utility/SRUtils.wdl b/wdl/tasks/Utility/SRUtils.wdl
@@ -16,7 +16,7 @@ task BamToFq {
         RuntimeAttr? runtime_attr_override
     }
 
-    String ref_arg = if defined(reference_fasta) then " --reference " + select_first([reference_fasta]) else ""
+    String ref_arg = if defined(reference_fasta) then " --reference ~{reference_fasta}" else ""
 
     Int disk_size = 1 + 4*ceil(size(bam, "GB"))