modify maximum_cycle_value parameter

broadinstitute · Jul 26, 2024 · da7737c · da7737c
1 parent 11c576a
commit da7737c
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/wdl/pipelines/ILMN/Alignment/SRFlowcell.wdl b/wdl/pipelines/ILMN/Alignment/SRFlowcell.wdl
@@ -191,7 +191,9 @@ workflow SRFlowcell {
                 known_sites_vcf = ref_map["known_sites_vcf"],
                 known_sites_index = ref_map["known_sites_index"],
 
-                prefix = SM + ".baseRecalibratorReport"
+                prefix = SM + ".baseRecalibratorReport",
+                maximum_cycle_value = 1000 
+
         }
 
         call SRUTIL.ApplyBQSR as t_010_ApplyBQSR {