Account for overlapping reads in Theoretical Sensitivity model#1802

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fleharty wants to merge 7 commits intomasterfrom mf_theoretical_sensitivity_improvements

+257-112

Commits on Apr 15, 2022

Overlapping reads supported in TheoreticalSensitity function, need to update tool
fleharty
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Adds overlap functionality to CollectWgsMetrics
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Commits on Apr 19, 2022

Enable overlap probability for CollectHsMetrics
fleharty
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Commits on Apr 21, 2022

Commits on Jun 3, 2022

Incomplete commit for Friday night, but almost finished responding to Chris
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Commits on Jul 13, 2022

Added tests for monotonicity. These tests fail, and suggest a possible problem with the model.
fleharty
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