Finally trying a run again

broadinstitute · Jan 12, 2024 · bd11a0a · bd11a0a
1 parent b3eb4f4
commit bd11a0a
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/.github/workflows/run_pipeline_on_azure.yml b/.github/workflows/run_pipeline_on_azure.yml
@@ -125,8 +125,9 @@ jobs:
         cd release/MultiSampleSmartSeq2SingleNucleus
         CRUN=$(cromshell --no_turtle --cromwell_url http://localhost:8000 submit --no-validation -op MultiSampleSmartSeq2SingleNucleus_1.0.options.json -d MultiSampleSmartSeq2SingleNucleus_1.0.zip MultiSampleSmartSeq2SingleNucleus_1.0.wdl mouse_example_azure.json)
         echo CRUN = $CRUN
-        cromshell alias --help
-        CSTATUS=$(cromshell list)
+        cat ~/.cromshell/${CROMWELL_URL}/ || true
+        cromshell alias -- -1 ss_proto_1 || true
+        CSTATUS=$(cromshell status ss_proto_1)
         #CSTATUS=$(cromshell --cromwell_url http://localhost:8000 status 113556d4-ac73-492e-bf9d-03eb5edcf469)
         curl -s -X POST "http://localhost:8000/api/workflows/v1/query" -H "accept: application/json" -H "Content-Type: application/json" -d "[{\"status\":\"Running\"},{\"status\":\"Submitted\"}]" | jq