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AlphaFold 3 inference pipeline.

Python 5,898 711 Updated Jan 23, 2025

python tools for TCR:peptide-MHC modeling and analysis

Python 67 10 Updated Apr 12, 2024
Python 36 6 Updated Oct 4, 2024

New fast and efficient version of UnionCom for topological alignment

Jupyter Notebook 1 Updated Jul 28, 2024

Simulating single-cell data using gene regulatory networks 📠

HTML 73 6 Updated Feb 21, 2024

A Theme for GitHub Pages

CSS 2,331 796 Updated Oct 10, 2023
Jupyter Notebook 10 2 Updated Aug 9, 2023

a unified single-cell data integration framework by optimal transport

Python 33 3 Updated Oct 1, 2024

Implementation of paper "Probabilistic Active Meta-Learning" (NeurIPS 2020).

Python 20 5 Updated Dec 2, 2020

A curated list of long-tailed recognition resources.

584 66 Updated Jun 13, 2023

A resource for researchers studying TCR antigen specificity

3 Updated May 29, 2024

The Software of UnionCom Algorithm

Python 25 4 Updated Jul 29, 2024

Pytorch🍊🍉 is delicious, just eat it! 😋😋

Jupyter Notebook 5,520 1,185 Updated Dec 5, 2024

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

Python 304 48 Updated Jun 12, 2023

Large language modeling applied to T-cell receptor (TCR) sequences.

Jupyter Notebook 48 8 Updated May 4, 2022

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

Jupyter Notebook 115 40 Updated Feb 15, 2023

A novel algorithm, DensityPath, which accurately and efficiently reconstructs the underlying cell developmental trajectories for large-scale scRNAseq data.

7 2 Updated Nov 11, 2018

A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.

MATLAB 11 1 Updated May 28, 2020

The software of Pamona, a partial manifold alignment algorithm.

Jupyter Notebook 19 3 Updated Mar 21, 2021

Single-cell ATAC-seq analysis via Latent feature Extraction

Python 100 19 Updated Aug 23, 2023
Jupyter Notebook 17 5 Updated Jul 31, 2021

PRObabilistic Simulations of ScRNA-seq Tree-like Topologies

Python 26 11 Updated Jan 10, 2024

POT : Python Optimal Transport

Python 2,477 507 Updated Jan 20, 2025

Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

Jupyter Notebook 67 17 Updated Jan 25, 2024

Transfer learning / domain adaptation / domain generalization / multi-task learning etc. Papers, codes, datasets, applications, tutorials.-迁移学习

Python 13,669 3,826 Updated Jan 18, 2025

A collection of AWESOME things about domian adaptation

5,174 881 Updated Oct 14, 2024
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