bug fixed

caravagnalab · Apr 6, 2024 · 075eafd · 075eafd
1 parent f1a895a
commit 075eafd
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/.Rhistory b/.Rhistory
@@ -1,5 +1,3 @@
-any(!is.numeric(genomic_data$to))
-any(!is.integer(genomic_data$DP))
 any(!is.integer(genomic_data$DNV))
 any(!is.integer(genomic_data$NV))
 any(!is.numeric(genomic_data$VAF))
@@ -510,3 +508,5 @@ devtools::load_all()
 plot_classification(x = output, sample = sample,assembly = T)
 names(x)
 names(x$classification)
+setwd('~/Documents/GitHub/CNAqc/')
+CNAqc:::advanced_phasing
diff --git a/R/classify.R b/R/classify.R
@@ -103,7 +103,7 @@ classify = function(x,
                                x = x,
                                mc.cores = num_cores)
 
-    tests = do.call(rbind, tests) %>% t()
+    tests = do.call(rbind, tests)
   } else {
 
     tests = lapply(ids(x), function(id) {