tickTack

tickTack is a package to infer kinetic parameters of an evolving population whose size is observed at discrete intervals of time. The tool is able to

• time simple CNAs for each segment affected by them

• time CNAs in a hierarchical fashion, grouping together segments that most likely underwent a CNA concurrently

Help and support

Installation

You can install the released version of tickTack from GitHub with:

# install.packages("devtools")
devtools::install_github("caravagnalab/tickTack")

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Copyright and contacts

Sara Cocomello, Giovanni Santacatterina, Giulio Caravagna. Cancer Data Science (CDS) Laboratory, University of Trieste, Italy.