2.2.0
- Added nanoq and toulligQC, and use them by default instead of NanoPlot and pycoQC.
- Added new parameter to choose which qc tools to run (of FastQC, NanoPlot, nanoq, pycoQC and toulligQC).
- Include a patched version of MultiQC to generate quality bar plots instead of line plots for nanoq.
- Simplify basecalling and demux and other pipeline improvements.
- Minor changes to MultiQC config.
- Update tool versions.