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46 Open 72 Closed
46 Open 72 Closed
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Issues list

Onepass model to compute empirical gene-gene correlation enhancement New feature or request
#296 opened Jan 31, 2025 by sjfleming
1
@sjfleming
scvi: consider allowing categorical_covariates to be used in a layer without batch enhancement New feature or request
#294 opened Jan 30, 2025 by sjfleming
PredictionWriter: allow direct write to cloud enhancement New feature or request
#290 opened Jan 21, 2025 by sjfleming
nmf: make data scaling into a real Transform where default is what cNMF does
#283 opened Jan 3, 2025 by sjfleming
nmf: missing dependencies
#273 opened Dec 4, 2024 by sjfleming
@sjfleming
nmf: other kinds of consensus
#272 opened Dec 3, 2024 by sjfleming
Defaults for CLI predict configs: default "obs_names_n" batch_key and default PredictionWriter
#266 opened Nov 7, 2024 by sjfleming
1
Allow PredictionWriter to create different kinds of saved output
#265 opened Nov 7, 2024 by sjfleming
1
More user-friendly instantiation of DistributedAnnDataCollection enhancement New feature or request
#262 opened Nov 5, 2024 by mbabadi
1
YAML improvement - do not specify model if using a checkpoint
#260 opened Oct 25, 2024 by sjfleming
4
cNMF - user experience
#257 opened Oct 22, 2024 by sjfleming
2 of 6 tasks
scvi: NaNs on apple M2 silicon wontfix This will not be worked on
#255 opened Oct 11, 2024 by sjfleming
Add support for SequentialLR
#249 opened Oct 7, 2024 by ordabayevy
Add if TYPE_CHECKING clauses to imports
#247 opened Oct 5, 2024 by ordabayevy
1
cpu_transforms do not get switched to eval mode during vaildation bug Something isn't working
#243 opened Sep 28, 2024 by ordabayevy
Add ComputeNorm callback enhancement New feature or request
#242 opened Sep 27, 2024 by ordabayevy
Initiate a ZScore transform directly from a OnePassMeanVarStd checkpoint file enhancement New feature or request
#241 opened Sep 24, 2024 by sjfleming
1
nmf - find ways to speed up model
#235 opened Sep 9, 2024 by sjfleming
2
Implement "on_predict_epoch_end" in CellariumModule enhancement New feature or request
#226 opened Aug 6, 2024 by sjfleming
1
5
Make transforms adaptable to the input enhancement New feature or request
#225 opened Aug 2, 2024 by ordabayevy
1
Auto-generate example_input_array property enhancement New feature or request
#224 opened Aug 1, 2024 by ordabayevy
Your IterableDataset has __len__ defined. In combination with multi-process data loading (when num_workers > 1), __len__ could be inaccurate if each worker is not configured independently to avoid having duplicate data.
#217 opened Jul 26, 2024 by ordabayevy
Use measured_genes_mask in OnePassMeanVarStd good first issue Good for newcomers help wanted Extra attention is needed
#212 opened Jul 9, 2024 by ordabayevy
@ordabayevy
1
NMF - implement consensus NMF enhancement New feature or request
#211 opened Jul 8, 2024 by sjfleming
@ImXman
scvi: ensure categorical covariates and continuous covariates work enhancement New feature or request
#205 opened Jul 3, 2024 by sjfleming
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